View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_12 (Length: 247)
Name: NF9070_low_12
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28996306 - 28996067
Alignment:
| Q |
1 |
agccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatattttttgagagagaaaaatgttaattagaaatttagaactnn |
100 |
Q |
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| T |
28996306 |
agccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatattttttgagagagaaaaatgttaattagaaatttagaactaa |
28996207 |
T |
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| Q |
101 |
nnnnntgagtagtgaaagatgattagatttgagttgaggagaattggtaatggatagaaaagaactatgatattgcttgtgtatatatagtgtacaatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996206 |
aaaaatgagtagtgaaagatgattagatttgagttgaggagaattggtaatggatagaaaagaactatgatattgcttgtgtatatatagtgtacaatgg |
28996107 |
T |
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| Q |
201 |
attattatattgcttgtgtttttagctaggacggtctgtg |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
28996106 |
attattatattgcttgtgtttttagctaggacggtgtgtg |
28996067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29008260 - 29008172
Alignment:
| Q |
1 |
agccaaaagacctaatatcacaaacaatttgattgaagaaaaacccatgttgtatatattttttgagagagaaaaatg-ttaattagaa |
88 |
Q |
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||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
29008260 |
agccaaaagtcccaatatcacaaacaatttgattgatgcaaaacccatgttgtatatgttttttgagagagaagaatgtttaattagaa |
29008172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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