View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_13 (Length: 239)
Name: NF9070_low_13
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28996299 - 28996520
Alignment:
| Q |
1 |
ttttggctacctcatgcctagcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaaggtcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996299 |
ttttggctacctcatgcctagcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaaggtcacc |
28996398 |
T |
|
| Q |
101 |
aacaccctctcctgcagtttctccttcaacctcttcttctccaggcccaagccctaacacatcttccccaccagcaccaggctcaaatagcccaacatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28996399 |
aacaccctctcctgcagtttctccttcaacctcttcttctccaggcccaagccctaacacatcttccccaccagcaccaggctcaaatagcccagcatca |
28996498 |
T |
|
| Q |
201 |
ggcccaggtgggcccggactag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28996499 |
ggcccaggtgggcccggactag |
28996520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 29008253 - 29008443
Alignment:
| Q |
1 |
ttttggctacctcatgcctagcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaaggtcacc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
29008253 |
ttttggctacatcatgcctagcacaagctcctgcaccagcacccacacaat---tatcaccaaattcagcaccagctccatcaccctccacaaaatcacc |
29008349 |
T |
|
| Q |
101 |
aacaccctctcctgcagtttctccttcaacctcttcttctccag------gcccaagccctaacacatcttccccaccagcaccaggctcaaat |
188 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||| | ||| ||||||||||||||||||||| |
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| T |
29008350 |
aacaccctctcctgcagtttctccttcaacttcttcttcaccaggctcaagcccaagcccgaacactttttcaccaccagcaccaggctcaaat |
29008443 |
T |
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