View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_2 (Length: 780)
Name: NF9070_low_2
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 147 - 477
Target Start/End: Original strand, 40711005 - 40711335
Alignment:
| Q |
147 |
gtaggaagaagaaatggaaaattattagtacaacaaacacaccaacgtaagcatgtaacagaccacaaaagcattattacctaaactcaaactcgaacaa |
246 |
Q |
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| T |
40711005 |
gtaggaagaagaaatggaaaattattagtacaacaaacacaccaacgtaagcatgtaacagaccacaaaagcattattacctaaactcaaactcgaacaa |
40711104 |
T |
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| Q |
247 |
acaacattattgaacttggttacgtagattcatttctcattttaggttcctgctccatgttttatgggtcttgttgtgtttgcttttactttgcttttag |
346 |
Q |
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| T |
40711105 |
acaacattattgaacttggttacgtagattcatttctcattttaggttcctgctccatgttttatgggtcttgttgtgtttgcttttactttgcttttag |
40711204 |
T |
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| Q |
347 |
cattttaagtgcaaaacaacaaggttttgtgttgatgcaatgcaatattattgcaaggataatttgcnnnnnnnnccttctctcatatgttaatgtcatt |
446 |
Q |
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| T |
40711205 |
cattttaagtgcaaaacaacaaggttttgtgttgatgcaatgcaatattattgcaaggataatttgctttttttcccttctatcatatgttaatgtcatt |
40711304 |
T |
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| Q |
447 |
tccatgtctgttagaaaacgtctggtgtgtg |
477 |
Q |
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| T |
40711305 |
tccatgtctgttagaaaacgtctggtgtgtg |
40711335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 538 - 762
Target Start/End: Original strand, 40711396 - 40711620
Alignment:
| Q |
538 |
cattttcagattaattactactaatataatatttctctcttcaaatgatatgcatatatattttctagagtaaaaaatgttttcgcttccaactaatttt |
637 |
Q |
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| T |
40711396 |
cattttcagattaattactactagtataatatttctctcttcaaatgatatgcacgtatattttttagagtaaaaaatgttttcgcttccaactaatttt |
40711495 |
T |
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| Q |
638 |
acattgatatccaaaaaagagtaaagtactatatgatattgtagttatttttattgtcgggaagttctaacatggacacgtacacgtgtgataagatgat |
737 |
Q |
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| T |
40711496 |
acattgatatccaaaaaagaataaagtactatatgatattgtagttatttttattggcgggaagttctatcatggacacgtacacgtgtgataagatgat |
40711595 |
T |
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| Q |
738 |
gaaagaaaaatttagaggtgagaat |
762 |
Q |
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| T |
40711596 |
gaaaggagaatttagaggtgagaat |
40711620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 40710867 - 40710961
Alignment:
| Q |
9 |
aggagcacagagaaggtcacatgacaaagtctatcatggagcacgtgctgaccaaggtggggctgtgatgtttgaaccattttccaatggcaaag |
103 |
Q |
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| T |
40710867 |
aggagcacagagaaggtcacatgacaaagtctatcatggagcacgtgctgaccaaggtggggctgtgatgtttgaaccattttccaatggcaaag |
40710961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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