View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_3 (Length: 388)
Name: NF9070_low_3
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 158 - 374
Target Start/End: Complemental strand, 44158750 - 44158535
Alignment:
| Q |
158 |
aatcaaacttaataaatacttttttgaaattcatcccagaacaaaagaactaaattaacaaactttttctcaaattccaccaccaagaacaagagtnnnn |
257 |
Q |
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| T |
44158750 |
aatcaaacttaataaatacttttttgaaattcatcccagaacaaaagaactaaattaacaaactttttctcaaattccaccaccaagaacaagagtaaaa |
44158651 |
T |
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| Q |
258 |
nnnnnnnnntcaacaagattatccaaactttgatggctcatcatctaaccaagatggtggtaaaaaacaacaaattcattgaattgagaaaagtcaattc |
357 |
Q |
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| T |
44158650 |
aacaaaaa-tcaacaagattatccaaactttgatggctcatcatctaaccaagatggtggtaaaaaacaacaaattcattgaattgagaaaagtcaattc |
44158552 |
T |
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| Q |
358 |
atacgtccttttcctct |
374 |
Q |
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||||||||||||||||| |
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| T |
44158551 |
atacgtccttttcctct |
44158535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 44159127 - 44159033
Alignment:
| Q |
68 |
ttcactcgttgttgcgctgcaacatctgaatcaggttttggtacgattgaaaatacacaagggttaacagacctagtgttacactgaaaaaatca |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
44159127 |
ttcactcgttgttgcgctgcaacatctgaatcaggttttgatacgattgaaaatacacaagggttaatacacctagtgttacactgaaaaaatca |
44159033 |
T |
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