View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_6 (Length: 319)
Name: NF9070_low_6
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 43 - 312
Target Start/End: Complemental strand, 16945610 - 16945341
Alignment:
| Q |
43 |
gaataattggtagtgtttatgatgaacagttgggcatggggagtgctgttgagacactatgtggacaagcatttggagcnnnnnnntatgaaatgttagg |
142 |
Q |
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| T |
16945610 |
gaataattggtgatgtttatgatgaacagttgggcatggggagtgctgttgagacactatgtggacaagcatttggagcaaaaaaatatgaaatgttagg |
16945511 |
T |
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| Q |
143 |
catatatttgcaaagatcaacagtgcttcttacaatagccggtttaattttaacaataatatacatattctccgaaccaattttaatatttctaggagaa |
242 |
Q |
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| T |
16945510 |
catatatttgcaaagatcaacagtgcttctcacaatagccggtttaattttaacaataatatacatattctccgaaccaattttaatatttctaggagaa |
16945411 |
T |
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| Q |
243 |
tcaccaaaaattgcatcagcagcatcactttttgtctttggtttaatcccacaaatatttgcctctgcta |
312 |
Q |
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| T |
16945410 |
tcaccaaaaattgcatcagcagcatccctttttgtctttggtttaatcccacaaatatttgcctatgcta |
16945341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 304
Target Start/End: Original strand, 37264260 - 37264496
Alignment:
| Q |
68 |
acagttgggcatggggagtgctgttgagacactatgtggacaagcatttggagcnnnnnnntatgaaatgttaggcatatatttgcaaagatcaacagtg |
167 |
Q |
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| T |
37264260 |
acagttgggtatgggaagtgcagttgagacactatgtggacaagcatatggagcagaaaaatatggcatgctaggaacatatttacaaagatcaacaatt |
37264359 |
T |
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| Q |
168 |
cttcttacaatagccggtttaattttaacaataatatacatattctccgaaccaattttaatatttctaggagaatcaccaaaaattgcatcagcagcat |
267 |
Q |
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| T |
37264360 |
cttctaacaataaccggttttttcctcacaattatttacgtattaagtgaaccaatcctagtattcattggacaatcaccaagaatagcttctgcagcag |
37264459 |
T |
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| Q |
268 |
cactttttgtctttggtttaatcccacaaatatttgc |
304 |
Q |
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| T |
37264460 |
cactttttgtgtatggacttatcccacaaatatttgc |
37264496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 8004962 - 8004867
Alignment:
| Q |
69 |
cagttgggcatggggagtgctgttgagacactatgtggacaagcatttggagcnnnnnnntatgaaatgttaggcatatatttgcaaagatcaaca |
164 |
Q |
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|||||||||||||| ||||| || |||||| ||||||||||||||| ||| || ||||||||| |||| ||||| |||||||| ||||| |
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| T |
8004962 |
cagttgggcatgggaagtgcagtggagacattatgtggacaagcatatggtgcaaacaaatatgaaatgctaggaatatacatgcaaagagcaaca |
8004867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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