View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_high_11 (Length: 276)
Name: NF9071_high_11
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 21129970 - 21130130
Alignment:
| Q |
98 |
ctcaacatcattcacagctttgaagcatctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaactctaagcaa |
197 |
Q |
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| T |
21129970 |
ctcaacatcattcacagctttgaagcatctcaacaacctgactcatagtaggcctaatatccctatcttcttcaacacaatccaaagcaactctaaccaa |
21130069 |
T |
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| Q |
198 |
aatttccatcttacttaaatcataattattccctattgcaggatccaagatttcttcaacc |
258 |
Q |
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| T |
21130070 |
aatttccatcttacttaaatcataattattccctattgcaggatccaagatttgttcaacc |
21130130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 18658148 - 18658292
Alignment:
| Q |
114 |
gctttgaagcatctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaactctaagcaaaatttccatcttactt |
213 |
Q |
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| T |
18658148 |
gctttgaagcttctcaaccacctggctcatattaggcctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttccatcttattt |
18658247 |
T |
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| Q |
214 |
aaatcataattattccctattgcaggatccaagatttcttcaacc |
258 |
Q |
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| T |
18658248 |
aaatcacaattggtccccattgcaggatccataatttcttcaacc |
18658292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 21129827 - 21129892
Alignment:
| Q |
7 |
agaagcagagaataaaacttaacatgttaaaaatataaattttaaatttactttcatctaaattta |
72 |
Q |
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| T |
21129827 |
agaagcaaagaataaaacttaacatgttaaaaatataaattttaaatttactttcatctaaattta |
21129892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 21111027 - 21111166
Alignment:
| Q |
115 |
ctttgaagcatctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaactctaagcaaaatttccatcttactta |
214 |
Q |
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| T |
21111027 |
ctttgaagcttctcaaccacctgactcatagtaggcctaatatttttatctacctctacacactccaaagcaactttcgccaaaatttccatcttacttg |
21111126 |
T |
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| Q |
215 |
aatcataattattccctattgcaggatccaagatttcttc |
254 |
Q |
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| T |
21111127 |
aatcacaattagttccaattttaggatccataatttcttc |
21111166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 39132749 - 39132610
Alignment:
| Q |
115 |
ctttgaagcatctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaactctaagcaaaatttccatcttactta |
214 |
Q |
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|||| |||||||||||| || || |||||| ||||||||||||| |||||||| || ||||| ||||| |||||| || |||||||||||||||| ||| |
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| T |
39132749 |
ctttcaagcatctcaaccacctggctcatattaggcctaatatctctatcttcctctacacactccaaagcaactttagccaaaatttccatcttaatta |
39132650 |
T |
|
| Q |
215 |
aatcataattattccctattgcaggatccaagatttcttc |
254 |
Q |
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| T |
39132649 |
aatcacaattaatcactattgaaggatccataatttcttc |
39132610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 4329323 - 4329433
Alignment:
| Q |
115 |
ctttgaagcatctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaactctaagcaaaatttccatcttactta |
214 |
Q |
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||||||||| ||||||| || |||||||||||||||||||||| ||||| | || ||||| | ||| |||||| | ||||||||||||||||||| |
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| T |
4329323 |
ctttgaagcttctcaaccacctgactcatagtaggcctaatatttttatctacctctacacacttcaaagcaactttggccaaaatttccatcttacttg |
4329422 |
T |
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| Q |
215 |
aatcataatta |
225 |
Q |
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||||| ||||| |
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| T |
4329423 |
aatcacaatta |
4329433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 26750564 - 26750627
Alignment:
| Q |
125 |
tctcaacaacttgactcatagtaggcctaatatccctatcttcttcaacacaatccaatgcaac |
188 |
Q |
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||||||||||||||||||| ||||| |||| ||| ||||||||| ||||||||||| ||||| |
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| T |
26750564 |
tctcaacaacttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagcaac |
26750627 |
T |
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