View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_high_18 (Length: 213)
Name: NF9071_high_18
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_high_18 |
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| [»] scaffold0865 (1 HSPs) |
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| [»] scaffold0906 (1 HSPs) |
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| [»] scaffold0747 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 18761128 - 18760940
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18761128 |
gtttggtgttgagtaggttatctatgtttatgttcaggttaggttcatcagattctgttgatgaatctgatgagggtgaagaaggtagattaggaaaggt |
18761029 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaagggatagctttagaagaagcttctgtagaaggatctgatgatgatg |
198 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18761028 |
aggaatctgagtatttgttggagcataagatggattacctgaagggatagctttagaagaagcttctgtagaaggatctgatgatgatg |
18760940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 4996445 - 4996302
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
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||||| ||||||| || |||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
4996445 |
gtttgatgttgaggagattatctatgtttttgttcaggtttggttcatcagattctgttgatgaatctgatgagggtgaagagggtagagtaggaaaggt |
4996346 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
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||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
4996345 |
aggaatctgagtattggttggagcattagatggattacctgaag |
4996302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 12184675 - 12184863
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
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||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
12184675 |
gtttggtgttgagtaggttatctatgtttttgttcaggttaggttcatcagattctgttgatgaatctgatgagggtgaagagggtagagtaggaaaggt |
12184774 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaagggatagctttagaagaagcttctgtagaaggatctgatgatgatg |
198 |
Q |
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||||||||||||| || ||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12184775 |
aggaatctgagtacatgagggaacatgagatgtattacctgaagaaatagctttagaagaagcttctgtagaaggatctgatgatgatg |
12184863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 9991927 - 9991784
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
9991927 |
gtttggtgttgagaaggttatctatgtttgagtttaggttaggttcatcagattctgttgatgaatctgatgagggtgaagagggtagagtaggaaaggt |
9991828 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||||||| |
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| T |
9991827 |
aggaatctgagtattagttggagcataagatggattacctgaag |
9991784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 6498993 - 6498850
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
6498993 |
gtttggtgttgaggagtttatctatgtttttgttcaggtttggttcatcagattctgttgatgaatctgatgagggtgaagtgggtagagtaggaaaggt |
6498894 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||| ||||| |
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| T |
6498893 |
aggaatctgagtattagttggagcataagatggattacttgaag |
6498850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 12246204 - 12246061
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||| |||| || ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |
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| T |
12246204 |
gtttgatgttaaggaggttatcgatgtttttgttcaggtttggttcatcagattctgtggatgaatctgatgagggtgaagagggtagagaagtaaaggt |
12246105 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
12246104 |
aggaatctgagtattagttggagcattagatggattacctgaag |
12246061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 16389490 - 16389420
Alignment:
| Q |
51 |
ggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggtaggaatctgagtatt |
124 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| ||||||||||| || |||||| |||||||||||||||||| |
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| T |
16389490 |
ggttcatctgattctgttgatga---tgatgagagtgaagaaggtggaataggaagggtaggaatctgagtatt |
16389420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 10635015 - 10634983
Alignment:
| Q |
41 |
gttcaggttaggttcatcagattctgtggatga |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
10635015 |
gttcaggttaggttcatcagattctgtggatga |
10634983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0865 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0865
Description:
Target: scaffold0865; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 4995 - 4852
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||| |
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|
| T |
4995 |
gtttggtgttgaggaggttatctatgtttttgttcaggtttggttcatcagattctgttgatgaatctaatgagggtgaagagggtagagtaggaaaggt |
4896 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
4895 |
aggaatctgagtattagttggagcattagatggattacctgaag |
4852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 22451360 - 22451248
Alignment:
| Q |
41 |
gttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggtaggaatctgagtatttgttggatcacaagat |
140 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || |||| |
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|
| T |
22451360 |
gttcaggtttggttcatcagattctgttgatgaatctgatgagggtgaagagggtagagtaggaaaggtaggaatctgagtattagttggagcattagat |
22451261 |
T |
|
| Q |
141 |
ggattacctgaag |
153 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22451260 |
ggattacctgaag |
22451248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 26023925 - 26024104
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||| ||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
26023925 |
gtttgntgttgagtaggtaatctatgtttttgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagagggtaga---------gt |
26024015 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaagggatagctttagaagaagcttctgtagaaggatctgatgatgatg |
198 |
Q |
| |
|
||||||||||||| || ||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
26024016 |
aggaatctgagtacatgagggaacatgagatgtattacctgaagaattagctttagaagaagcttttgtagaaggatctgaagatgatg |
26024104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0906 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0906
Description:
Target: scaffold0906; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 2586 - 2443
Alignment:
| Q |
10 |
gtttggtgttgagaaggttattgatgtttgcgttcaggttaggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggt |
109 |
Q |
| |
|
||||| |||| || ||||||| |||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
2586 |
gtttgatgttaaggaggttatctatgtttttgttcaggtttagttcatcagattatgttgatgaatctgatgagggtgaagaaggtggagtaggaaaggt |
2487 |
T |
|
| Q |
110 |
aggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||||||||||||| | |||| || ||||||||||||||||| |
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|
| T |
2486 |
aggaatctgagtattagatggagcattagatggattacctgaag |
2443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0747 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0747
Description:
Target: scaffold0747; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 4582 - 4678
Alignment:
| Q |
54 |
tcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggtaggaatctgagtatttgttggatcacaagatggattacctgaag |
153 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||| |||||| |||||| |||||||||||||||||| | |||| | ||||| ||||||||||| |
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|
| T |
4582 |
tcatctgattctgtggatga---tgatgaaggtgaagatggtagagtaggaagggtaggaatctgagtattagatggagctttagatgaattacctgaag |
4678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 31446582 - 31446483
Alignment:
| Q |
51 |
ggttcatcagattctgtggatgaatctgatgagggtgaagaaggtagattaggaaaggtaggaatctgagtatttgttggatcacaagatggattacctg |
150 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| ||||||||||| || |||||| |||||||||||||||||| | |||| | ||||| |||||||| |
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|
| T |
31446582 |
ggttcatctgattctgttgatga---tgatgagagtgaagaaggtggagtaggaagggtaggaatctgagtattagatggagctttagatgaattacctg |
31446486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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