View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9071_high_3 (Length: 517)

Name: NF9071_high_3
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9071_high_3
NF9071_high_3
[»] chr5 (4 HSPs)
chr5 (243-490)||(28385277-28385524)
chr5 (13-198)||(28385569-28385754)
chr5 (247-489)||(12540629-12540871)
chr5 (13-198)||(12540920-12541105)
[»] chr7 (2 HSPs)
chr7 (247-489)||(3417520-3417762)
chr7 (23-195)||(3417296-3417468)
[»] chr2 (6 HSPs)
chr2 (249-489)||(13448307-13448547)
chr2 (247-489)||(13440144-13440386)
chr2 (13-198)||(13440435-13440620)
chr2 (247-418)||(13454849-13455020)
chr2 (16-198)||(13448598-13448780)
chr2 (48-196)||(13455071-13455219)
[»] chr4 (7 HSPs)
chr4 (247-418)||(48958159-48958333)
chr4 (252-489)||(48965273-48965510)
chr4 (83-198)||(48958382-48958497)
chr4 (83-198)||(48912171-48912286)
chr4 (119-193)||(48974349-48974423)
chr4 (247-373)||(48961353-48961482)
chr4 (129-175)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (13-196)||(12589925-12590108)
chr6 (15-198)||(12483222-12483405)
chr6 (247-343)||(12483454-12483556)
[»] scaffold0536 (1 HSPs)
scaffold0536 (83-198)||(6337-6452)
[»] chr8 (1 HSPs)
chr8 (121-198)||(12641345-12641422)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 243 - 490
Target Start/End: Complemental strand, 28385524 - 28385277
Alignment:
Q  243 tggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385524 tggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 28385425  T
Q  343 ggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 442  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385424 ggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 28385325  T
Q  443 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgt 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385324 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgt 28385277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 28385754 - 28385569
Alignment:
Q  13 aagcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaag 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28385754 aagcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaag 28385655  T
Q  113 cataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28385654 cataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctg 28385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 247 - 489
Target Start/End: Complemental strand, 12540871 - 12540629
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 346  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  12540871 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 12540772  T
Q  347 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 446  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   ||| |||    
T  12540771 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag 12540672  T
Q  447 aaattgataacaacagtccgaagaattggagtggaagtaggtg 489  Q
    ||| | ||||||   |||||| |||||||||| ||||||||||    
T  12540671 aaactaataacacaggtccgaggaattggagtagaagtaggtg 12540629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 12541105 - 12540920
Alignment:
Q  13 aagcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaag 112  Q
    |||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| |||||||||||||    
T  12541105 aagcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaag 12541006  T
Q  113 cataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
    |||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   ||||||||||||||||||||||||||||    
T  12541005 cataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctg 12540920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 247 - 489
Target Start/End: Original strand, 3417520 - 3417762
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  347 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 446  Q
    |||| |||||||||| |||||||||||| |||| || |||||||| || |||||||||||||||||||||||  |||||| |||||| ||   |||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 3417719  T
Q  447 aaattgataacaacagtccgaagaattggagtggaagtaggtg 489  Q
    ||| | ||||||  ||||||| |||||||||||||||||||||    
T  3417720 aaactaataacacaagtccgaggaattggagtggaagtaggtg 3417762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  23 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 122  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  123 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 195  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 489
Target Start/End: Complemental strand, 13448547 - 13448307
Alignment:
Q  249 ccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggat 348  Q
    |||||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||| |||  |||||||||| ||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  349 ttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaa 448  Q
    || |||| |||||||||||||||||||  ||||| |||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  |||||||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaa 13448348  T
Q  449 attgataacaacagtccgaagaattggagtggaagtaggtg 489  Q
    | ||||||||  | ||||| |||||||||| ||||| ||||    
T  13448347 actgataacacaattccgaggaattggagttgaagtcggtg 13448307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 247 - 489
Target Start/End: Complemental strand, 13440386 - 13440144
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 346  Q
    |||| |||||||| || |||||||||||| | | || |||||| || || | |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  347 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 446  Q
    |||| |||| ||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  ||| |||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag 13440187  T
Q  447 aaattgataacaacagtccgaagaattggagtggaagtaggtg 489  Q
    ||| || |||||  | | ||| |||||||||||||||| ||||    
T  13440186 aaactggtaacacaatttcgaggaattggagtggaagtcggtg 13440144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 13440620 - 13440435
Alignment:
Q  13 aagcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaag 112  Q
    ||||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| |||||||||||||    
T  13440620 aagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaag 13440521  T
Q  113 cataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
    ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13440520 catcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctg 13440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 13455020 - 13454849
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 346  Q
    |||||||||||||||| |||| |||||| |  || |||||||| || || |||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  347 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggcc 418  Q
    |||| |||| |||||||||||||||||||| ||||| |||||| ||  ||||||||||||||||||||||||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggcc 13454849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 13448780 - 13448598
Alignment:
Q  16 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 115  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  116 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctg 13448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  48 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 147  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  148 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 196  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 247 - 418
Target Start/End: Complemental strand, 48958333 - 48958159
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 343  Q
    ||||||| ||||| || |||||||||||||||||||||   ||||| || || ||||| ||||||||||||||| ||||  ||||| ||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  344 gggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggcc 418  Q
     | |||| |||||||||||||| ||||||| | ||| || |||||| ||||||| ||||||||||| ||||||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggcc 48958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 489
Target Start/End: Complemental strand, 48965510 - 48965273
Alignment:
Q  252 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 351  Q
    |||||||| || |||||||||||||||||||||||||| || || ||||||||||| || || ||||||||  ||||| |||| || ||||| |  |||     
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  352 tgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt 451  Q
    |||| ||||| ||  ||||||| |  || || |||||||| ||||| ||||| ||||| || |||||||  |||| ||| || |||  ||| || ||| |    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact 48965311  T
Q  452 gataacaacagtccgaagaattggagtggaagtaggtg 489  Q
    |||||||  ||| ||| | |||||||||||||| ||||    
T  48965310 gataacagaagtgcgagggattggagtggaagttggtg 48965273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 48958497 - 48958382
Alignment:
Q  83 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 182  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  183 atatgggttgttcctg 198  Q
     |||||||||||||||    
T  48958397 gtatgggttgttcctg 48958382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 48912171 - 48912286
Alignment:
Q  83 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 182  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  183 atatgggttgttcctg 198  Q
    ||||||||||||||||    
T  48912271 atatgggttgttcctg 48912286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  119 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 193  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 373
Target Start/End: Complemental strand, 48961482 - 48961353
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 343  Q
    ||||||| |||||||| ||||||||||||| |   ||||||||||| || || | ||| ||||||||||||||| ||||  || || || | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  344 gggatttctgacacattgcggggggaactc 373  Q
     |  ||| |||| ||||||||| |||||||    
T  48961382 tgtgtttatgacgcattgcgggtggaactc 48961353  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  129 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 175  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 12589925 - 12590108
Alignment:
Q  13 aagcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaag 112  Q
    ||||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| ||    
T  12589925 aagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggag 12590024  T
Q  113 cataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 196  Q
    ||||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590025 catatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 12483222 - 12483405
Alignment:
Q  15 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 114  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  115 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   ||||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 12483454 - 12483556
Alignment:
Q  247 tgccgaagggatttgaggagagaaacattgga------aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggt 340  Q
    ||||||||||||||||||||||||||||| ||      |||| |||||| || |||||||| ||||| ||||| || ||||| |||||| ||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  341 ggg 343  Q
    |||    
T  12483554 ggg 12483556  T

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Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 6337 - 6452
Alignment:
Q  83 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 182  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  183 atatgggttgttcctg 198  Q
    ||||||||||||||||    
T  6437 atatgggttgttcctg 6452  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 12641345 - 12641422
Alignment:
Q  121 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 198  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  |||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctg 12641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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