View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_high_4 (Length: 510)
Name: NF9071_high_4
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 12 - 494
Target Start/End: Original strand, 10404938 - 10405420
Alignment:
| Q |
12 |
tgttggatcaggagtacaaggaatcaaagttgggttggcattgacatcatttttcagtgctactacggcttataatgtgtttctcatttacattatagag |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10404938 |
tgttggatcaggagtacaaggaatcaaagttgggttggcgttgacatcgtttttcagtgctactacagcttataatgtgtttctcatttacattatagag |
10405037 |
T |
|
| Q |
112 |
ttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagccattgttttcggtaacatctttagtccttttttaatatctgctgggagga |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
10405038 |
ttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagctattgttttcggcaacatttttagtccttttttgatatctgctgggagga |
10405137 |
T |
|
| Q |
212 |
aaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtcatgtgttaccttgcttgctttgccagagaccaaaggacaagctctttgtga |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10405138 |
aaaatgatgttttctcttatggtgtgtttggggttgttattatgttgtcatgtgttacattgcttgctttgccagagaccaaaggacaagctctttgtga |
10405237 |
T |
|
| Q |
312 |
tactatggatcaacaagagaaaaaagacaaaaattatgtttaatgtaatatttgtactagggtctgttttttatgcatttaggttcatttggtttgttgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10405238 |
tactatggatcaacaagagaaaaaagacaaaaattatgtttaatgtaatatttgtactagggtctgttttttatgcatttaggttcatttggtttgttgt |
10405337 |
T |
|
| Q |
412 |
atttggttgaagctttgctttgtcttggttttgaagtgtgtgaatctaagatcttatttttgaacaatgatataagaatctaa |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10405338 |
atttggttgaagctttgctttgtcttggttttgaagtgtgtgaatctaaaatcttatttttgaacaatgatataagaatctaa |
10405420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 10378952 - 10379278
Alignment:
| Q |
12 |
tgttggatcaggagtacaaggaatcaaagttgggttggcattgacatcatttttcagtgctactacggcttataatgtgtttctcatttacattatagag |
111 |
Q |
| |
|
||||||||| ||| ||||||||| || || ||||| ||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
10378952 |
tgttggatcgggacaacaaggaattaaggtcgggttagcaatgacatcgtttttcagtgcttgcacagcttataatgtgtttctcatttacattattgag |
10379051 |
T |
|
| Q |
112 |
ttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagccattgttttcggtaacatctttagtccttttttaatatctgctgggagga |
211 |
Q |
| |
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||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || ||||| |||||||||||||||| |
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| T |
10379052 |
gtgtttccaacaagtgtgagaaacactacaacatcattggtgagacaagctattgtttttggtaacattttcagcccctttttgatatctgctgggagga |
10379151 |
T |
|
| Q |
212 |
aaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtcatgtgttaccttgcttgctttgccagagaccaaaggacaagctctttgtga |
311 |
Q |
| |
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|||||||| | |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| | |||||||||| | | |||| |||||||| ||| |
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| T |
10379152 |
aaaatgatattttctcttatggtgtgtttggagttgttatcatgttgtcttgtgttacattgctcggtttgccagagtcaagaggattagctctttctga |
10379251 |
T |
|
| Q |
312 |
tactatggatcaacaagagaaaaaaga |
338 |
Q |
| |
|
||| ||||||||||||||||| ||||| |
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| T |
10379252 |
taccatggatcaacaagagaagaaaga |
10379278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 37577502 - 37577323
Alignment:
| Q |
75 |
tacggcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagccattgttttcggt |
174 |
Q |
| |
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||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||| ||| || |
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| T |
37577502 |
tacggcttataatgtgtttat-atatacattatagagttgtttccgacatctgtgaggaacacaacaacttcattggtgagacaagcaattgtgttccgt |
37577404 |
T |
|
| Q |
175 |
aacatctttagtccttttttaatatctgctgggaggaaaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtc |
260 |
Q |
| |
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||| || |||| ||||| | | ||||||||||||| || | |||||||||||||||||||| |||||||| |||||||| |
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| T |
37577403 |
tgcatattctgtccctttttgaca-----tgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtc |
37577323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 34262789 - 34262604
Alignment:
| Q |
75 |
tacggcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagccattgttttcggt |
174 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| ||||| |||||| |
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| T |
34262789 |
tacggcttataatgtgtttctaatatacattatagagttgtttccgacatgtgtgaggaacacaacaacttcgttggtgagacaagcgattgtgttcggt |
34262690 |
T |
|
| Q |
175 |
aacatctttagtccttttttaatatctgctgggaggaaaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtc |
260 |
Q |
| |
|
||| || |||| ||||| ||||||||||||||||||||| || | |||||||||||||||||||| |||||||| |||||||| |
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| T |
34262689 |
tgcatattctgtccctttttgatatctgctgggaggaaaaataatattttctcttatggtgtgtttggagttgttatcatgttgtc |
34262604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 59 - 257
Target Start/End: Complemental strand, 35621726 - 35621528
Alignment:
| Q |
59 |
catttttcagtgctactacggcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagaca |
158 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||| |
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| T |
35621726 |
cattttttggtgctagtacggcttataacgtgtttctcatatacattatagagttgtttccaacatgtgtgagaaacacaacaacgtcgttggtgagaca |
35621627 |
T |
|
| Q |
159 |
agccattgttttcggtaacatctttagtccttttttaatatctgctgggaggaaaaatgatgtcttctcttatggtgtgtttggggttgttattatgtt |
257 |
Q |
| |
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||| | ||||| ||| ||| ||| |||| ||||| |||||||| |||||||||||| || | || ||||||||| ||||||| |||||||| ||||| |
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| T |
35621626 |
agcaacagtttttggttgcatattttgtccctttttgatatctgcagggaggaaaaataatatattttcttatggtatgtttggagttgttataatgtt |
35621528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 75 - 338
Target Start/End: Original strand, 14544006 - 14544269
Alignment:
| Q |
75 |
tacggcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaagccattgttttcggt |
174 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||||| |
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| T |
14544006 |
tacggcttataatgtgtttctcatatacattatagagttgtttccgacatgtgtgaggaacacaacaacgtcgttggtgagacaagctattgtgttcggt |
14544105 |
T |
|
| Q |
175 |
aacatctttagtccttttttaatatctgctgggaggaaaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtcatgtgttaccttgc |
274 |
Q |
| |
|
||| ||| |||| ||||| ||||| || ||||||||||| || | | ||| |||||||||||||| |||||||| |||||||| | |||| ||| |
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|
| T |
14544106 |
tgcatattttgtccctttttgatatccgcggggaggaaaaacaatatttactcatatggtgtgtttggagttgttataatgttgtccaattttacattgt |
14544205 |
T |
|
| Q |
275 |
ttgctttgccagagaccaaaggacaagctctttgtgatactatggatcaacaagagaaaaaaga |
338 |
Q |
| |
|
| |||||||||||| | ||| | |||||||||||| ||||||||||||||||| ||||| |
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|
| T |
14544206 |
tctttttgccagagactatagggattgttctttgtgatacaatggatcaacaagagaagaaaga |
14544269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 14579595 - 14579318
Alignment:
| Q |
61 |
tttttcagtgctactacggcttataatgtgtttctcatttacattatagagttgtttccgacaagtgtgaggaacacgacaacgtcattggtgagacaag |
160 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
14579595 |
tttttcggtgcttgtacggcttataatgtgtttctcatatacattatagagttgtttccgacatgtgtgaggaacacaacaacgtcgttggtgagacaag |
14579496 |
T |
|
| Q |
161 |
ccattgttttcggtaacatctttagtccttttttaatatctgctgggaggaaaaatgatgtcttctcttatggtgtgtttggggttgttattatgttgtc |
260 |
Q |
| |
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| ||||| |||||| ||| ||| |||| ||||| ||||| || ||||||||||| || | | ||| |||||||||||||| |||||||| |||||||| |
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| T |
14579495 |
ctattgtgttcggttgcatattttgtccctttttgatatcggcggggaggaaaaacaatatttactcatatggtgtgtttggagttgttataatgttgtc |
14579396 |
T |
|
| Q |
261 |
atgtgttaccttgcttgctttgccagagaccaaaggacaagctctttgtgatactatggatcaacaagagaaaaaaga |
338 |
Q |
| |
|
| |||| ||| | |||||| ||||| | ||| | |||||||||||| ||||||||||||||||| ||||| |
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|
| T |
14579395 |
caattttacattgttctttttgccggagactatgggaattgttctttgtgatacaatggatcaacaagagaagaaaga |
14579318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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