View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_high_5 (Length: 507)
Name: NF9071_high_5
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_high_5 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0536 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 23 - 507
Target Start/End: Original strand, 12540238 - 12540722
Alignment:
| Q |
23 |
agcagcacagaaccagaaaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaac |
122 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
12540238 |
agcaacaccgaaccagaaaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccatagcattcacacttcttcttaacgaaac |
12540337 |
T |
|
| Q |
123 |
aacgacgttattaggataaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540338 |
aacgacgttattaggataaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaaga |
12540437 |
T |
|
| Q |
223 |
taacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataacca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540438 |
taacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataacca |
12540537 |
T |
|
| Q |
323 |
ccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccatttccatttgtacaccattctgttgcacctactt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12540538 |
ccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctactt |
12540637 |
T |
|
| Q |
423 |
ctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaactcc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12540638 |
ctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcc |
12540722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 74 - 507
Target Start/End: Original strand, 28384938 - 28385371
Alignment:
| Q |
74 |
gaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactcctttaatt |
173 |
Q |
| |
|
|||||||||| ||| ||| | ||||||| | |||| | ||| |||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||| ||| |
|
|
| T |
28384938 |
gaaattcatcgaccaaatacataacattaatacttgtgcttgacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgatt |
28385037 |
T |
|
| Q |
174 |
aatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagcctt |
273 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
28385038 |
aatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagcctt |
28385137 |
T |
|
| Q |
274 |
ctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaac |
373 |
Q |
| |
|
|||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
28385138 |
ctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctcaccaac |
28385237 |
T |
|
| Q |
374 |
ttctttctctccccatttccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgat |
473 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||| |||||| |||||| | |||||| ||| ||||||| |
|
|
| T |
28385238 |
ttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgat |
28385337 |
T |
|
| Q |
474 |
ctccatgacatggccacgttatcattggaactcc |
507 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |
|
|
| T |
28385338 |
ctgcatgacaaggccacgttatcattggaactcc |
28385371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 164 - 507
Target Start/End: Complemental strand, 3418012 - 3417669
Alignment:
| Q |
164 |
tcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctc |
263 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
3418012 |
tcctttaattaatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctc |
3417913 |
T |
|
| Q |
264 |
gtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctct |
363 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||||||| |||||| |||| || || ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
3417912 |
gtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctct |
3417813 |
T |
|
| Q |
364 |
gccaaccaacttctttctctccccatttccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttg |
463 |
Q |
| |
|
|| ||||||||||||||||||||| | |||| || || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
3417812 |
gctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattg |
3417713 |
T |
|
| Q |
464 |
aataagtgatctccatgacatggccacgttatcattggaactcc |
507 |
Q |
| |
|
|| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3417712 |
aacaattgatctccatgacccggccacgttatcattggaactcc |
3417669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 105 - 507
Target Start/End: Original strand, 13454468 - 13454871
Alignment:
| Q |
105 |
acttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactccttt-aattaatcatgtggcttgcagtctctaaatcttt |
203 |
Q |
| |
|
|||||| ||| |||||||||| | |||||||| | || || | ||||| | |||| ||||||| ||||||||||| |||||| || ||| ||||||| |
|
|
| T |
13454468 |
acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatcttt |
13454567 |
T |
|
| Q |
204 |
taatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcat |
303 |
Q |
| |
|
||| ||| || ||||||| ||||||||||||| ||| || ||||||| ||||| |||| || ||||||| ||||||| |||||| ||||||| || || |
|
|
| T |
13454568 |
taagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctcgagcacgtaccctgat |
13454667 |
T |
|
| Q |
304 |
attttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccatttccatttgtacac |
403 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||| |||||||||||||| |||| ||| |||||||||| ||||||| || ||| |||||||| |
|
|
| T |
13454668 |
atttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacac |
13454767 |
T |
|
| Q |
404 |
cattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcattggaa |
503 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| || ||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||| |
|
|
| T |
13454768 |
cattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaa |
13454867 |
T |
|
| Q |
504 |
ctcc |
507 |
Q |
| |
|
|||| |
|
|
| T |
13454868 |
ctcc |
13454871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 198 - 507
Target Start/End: Original strand, 13448091 - 13448400
Alignment:
| Q |
198 |
atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag |
297 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||| ||| || ||||||||||||| |||| || |||| || ||||||| |||||| |||||||| |
|
|
| T |
13448091 |
atcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtag |
13448190 |
T |
|
| Q |
298 |
tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccatttccattt |
397 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| |||||||| || ||||||||||||||| | ||| | |
|
|
| T |
13448191 |
cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcgacaccactc |
13448290 |
T |
|
| Q |
398 |
gtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatca |
497 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||| ||| | || |||||||||||| ||||||||||||| |
|
|
| T |
13448291 |
gtacaccattctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatca |
13448390 |
T |
|
| Q |
498 |
ttggaactcc |
507 |
Q |
| |
|
|||||||||| |
|
|
| T |
13448391 |
ttggaactcc |
13448400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 507
Target Start/End: Original strand, 13439829 - 13440237
Alignment:
| Q |
100 |
ttcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactccttt-aattaatcatgtggcttgcagtctctaaa |
198 |
Q |
| |
|
||||||||||| ||| ||||| |||| | ||||||||||| || | |||||| | ||||| |||||| |||||||||||| ||||| |||||| || |
|
|
| T |
13439829 |
ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa |
13439928 |
T |
|
| Q |
199 |
tcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagt |
298 |
Q |
| |
|
|||||||| ||| || || |||| ||||||||||||| ||| || ||||||||||||| |||| || ||||||| ||||||| |||| | ||| |||| |
|
|
| T |
13439929 |
tcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttgagcaagtagc |
13440028 |
T |
|
| Q |
299 |
ctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccatttccatttg |
398 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||||||| || ||||| |
|
|
| T |
13440029 |
ctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattct |
13440128 |
T |
|
| Q |
399 |
tacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacatggccacgttatcat |
498 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||| | ||||||| |||||||||||| | || |||||||||||| |||||||||||||| |
|
|
| T |
13440129 |
tacaccattccgttgcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcat |
13440228 |
T |
|
| Q |
499 |
tggaactcc |
507 |
Q |
| |
|
||||||||| |
|
|
| T |
13440229 |
tggaactcc |
13440237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 181 - 480
Target Start/End: Original strand, 48965040 - 48965339
Alignment:
| Q |
181 |
tggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctcca |
280 |
Q |
| |
|
|||||||| ||||| |||||||| | || || ||||| | ||||||||| |||||||| || ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
48965040 |
tggcttgctatctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctcca |
48965139 |
T |
|
| Q |
281 |
atctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttc |
380 |
Q |
| |
|
| |||| | ||||| ||| || || |||||||||| ||||| |||||||||||||||| |||||||||||||| ||| || | |||| ||||| || |
|
|
| T |
48965140 |
aactcttgagcacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctc |
48965239 |
T |
|
| Q |
381 |
tctccccatttccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatg |
480 |
Q |
| |
|
| || || ||| | |||||||||||||||||| ||||| |||||||| ||||| || | |||||| ||||| |||||| | || || |||||||| |
|
|
| T |
48965240 |
tttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatg |
48965339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 354
Target Start/End: Original strand, 48957844 - 48958028
Alignment:
| Q |
170 |
aattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctag |
269 |
Q |
| |
|
||||||||| ||| |||||||| ||| | | ||||| || || |||||||| |||||||| |||||||| || ||||||||||||||||||||| ||| |
|
|
| T |
48957844 |
aattaatcaagtgtcttgcagtttctcatttgtttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtag |
48957943 |
T |
|
| Q |
270 |
ccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctat |
354 |
Q |
| |
|
|||| ||||| | |||| | ||||| || | || | |||||||||| |||||| |||||||||||| ||| |||||| ||||| |
|
|
| T |
48957944 |
ccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctat |
48958028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 354
Target Start/End: Original strand, 48960994 - 48961175
Alignment:
| Q |
173 |
taatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagcct |
272 |
Q |
| |
|
|||||| ||||||| | |||||| |||||||||| || || || |||| ||||||||||||||||| || || ||| |||||||||||| | |||||| |
|
|
| T |
48960994 |
taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagcct |
48961093 |
T |
|
| Q |
273 |
tctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctat |
354 |
Q |
| |
|
| || |||| |||||| ||||| |||| |||| ||| ||||||| |||||| ||||| ||| | |||| ||||||||||| |
|
|
| T |
48961094 |
tatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat |
48961175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 364
Target Start/End: Original strand, 48967215 - 48967352
Alignment:
| Q |
227 |
aaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccat |
326 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| |||||| ||||||| ||||||| ||||| |||||| |||| || || |||||||||| || | |
|
|
| T |
48967215 |
aaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcgagcacgttgtctgatcttctcagcttcatcgtcattgt |
48967314 |
T |
|
| Q |
327 |
ccatcaatctcctcatagccttctctatgccatctctg |
364 |
Q |
| |
|
|||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
48967315 |
ccatcaatcttcttatagctttctctatgttatctctg |
48967352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 504
Target Start/End: Complemental strand, 48912759 - 48912490
Alignment:
| Q |
235 |
atgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaat |
334 |
Q |
| |
|
|||||| ||||||||||||| || || || |||| ||||| |||| |||||| ||| || |||| || || |||||||||| ||||| ||||||||| |
|
|
| T |
48912759 |
atgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaat |
48912660 |
T |
|
| Q |
335 |
ctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccatttccatttgtacaccattctgttgcacctacttctactccaattc |
434 |
Q |
| |
|
| | ||| | ||||||| || ||| || | ||||| ||||| ||| |||||| | ||| |||| | |||||| |||||||| || || || ||||| | |
|
|
| T |
48912659 |
cgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcc |
48912560 |
T |
|
| Q |
435 |
ctcggacctgtgttattagtttctcgttgaataagtgatctccatgacat-ggccacgttatcattggaac |
504 |
Q |
| |
|
| | ||||||||||| | ||||| ||| | || || |||||||| ||| |||||||| ||||||||||| |
|
|
| T |
48912559 |
catgcacctgtgttatcaacttctcattgtaaaactgttctccatg-catcggccacgtgatcattggaac |
48912490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 6852 - 6772
Alignment:
| Q |
308 |
tcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctcccca |
388 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||| || | ||| || || |||| ||||| |||||||||| |
|
|
| T |
6852 |
tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctcccca |
6772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 354
Target Start/End: Complemental strand, 12641960 - 12641776
Alignment:
| Q |
170 |
aattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctag |
269 |
Q |
| |
|
||||| ||| |||| |||| |||||| ||||||||| |||| ||||||| |||||||| |||||||| || || ||||||| |||||| || ||| |
|
|
| T |
12641960 |
aattattcaagtggtttgcggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtag |
12641861 |
T |
|
| Q |
270 |
ccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctat |
354 |
Q |
| |
|
|||| | |||| |||| | |||||| |||| || | | |||||||| |||| | |||||||||||||||| ||| |||||||| |
|
|
| T |
12641860 |
cctttttcccaaactcttgagcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctat |
12641776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 12590595 - 12590455
Alignment:
| Q |
223 |
taacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataacca |
322 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||||||| ||||||| || || || | |||| | |||| |||| || | ||||||||| ||| |
|
|
| T |
12590595 |
taacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgcca |
12590496 |
T |
|
| Q |
323 |
ccatccatcaatctcctcatagccttctctatgccatctct |
363 |
Q |
| |
|
|||||||||||||| |||| ||| |||| ||||| |||||| |
|
|
| T |
12590495 |
ccatccatcaatcttctcacagcattctttatgctatctct |
12590455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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