View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_14 (Length: 478)
Name: NF9071_low_14
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 26082328 - 26081871
Alignment:
| Q |
18 |
atctatgaggtggatgtgtggtttttattcctttgagaattgatatttaaattttagtttctgtgactgacatagaatgtttttcaagagaaagtatggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26082328 |
atctatgaggtggatgtgtggtttttattcctttgagaattgatatttaaattttagtttctgtgactgacatagaatgtttttcaagagaaagtatggg |
26082229 |
T |
|
| Q |
118 |
atagtcacaagatttgtgcactttatttataccccatacagatagaatggtttcgaaaataaacaaacgaaccattatctctttgtttgccctaaagggg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26082228 |
atagtcacaagatttgggcactttatttataccccacacagatagaatggtttcgaaaataaacaaatgaaccattatctctttgtttgccctaaagggg |
26082129 |
T |
|
| Q |
218 |
taaacgatgcttaaccttatctatcacgaggattatgaaataatgacacgaactacacggggtaagtgatattattaaatagtaattgtggcggaataaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||| |
|
|
| T |
26082128 |
taaacaatgcttaaccttatctatcacgaggattatgaaataatgacacgaactacacggggtaagagagattattaaatagtaattgtagcagaataaa |
26082029 |
T |
|
| Q |
318 |
caccgttgtcccaaaacaacat-------nnnnnnnnnnnnntatcttcaaaagagtgtaaagtgggttaaacagttctttccttaaagtaaaataagtc |
410 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26082028 |
caccgttgtcccaaaacaacataaaaaacataaaacaaaaaatatctccaaaagagtgtaaagtgggttaaacagtccgttccttaaagtaaaataagtc |
26081929 |
T |
|
| Q |
411 |
tactaccagtctattatctaacatctcccttcaaactaaagatgcattaacacgaaac |
468 |
Q |
| |
|
|||||| | |||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26081928 |
tactactaatctattatctaacacctcccttgaaactaaagatgcattaacatgaaac |
26081871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 26106115 - 26105658
Alignment:
| Q |
18 |
atctatgaggtggatgtgtggtttttattcctttgagaattgatatttaaattttagtttctgtgactgacatagaatgtttttcaagagaaagtatggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26106115 |
atctatgaggtggatgtgtggtttttattcctttgagaattgatatttaaattttagtttctgtgactgacatagaatgtttttcaagagaaagtatggg |
26106016 |
T |
|
| Q |
118 |
atagtcacaagatttgtgcactttatttataccccatacagatagaatggtttcgaaaataaacaaacgaaccattatctctttgtttgccctaaagggg |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26106015 |
atagtcacaagatttgggcactttatttataccccacacagatagaatggtttcgaaaataaacaaatgaaccattatctctttgtttgccctaaagggg |
26105916 |
T |
|
| Q |
218 |
taaacgatgcttaaccttatctatcacgaggattatgaaataatgacacgaactacacggggtaagtgatattattaaatagtaattgtggcggaataaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||| |
|
|
| T |
26105915 |
taaacaatgcttaaccttatctatcacgaggattatgaaataatgacacgaactacacggggtaagagagattattaaatagtaattgtagcagaataaa |
26105816 |
T |
|
| Q |
318 |
caccgttgtcccaaaacaacat-------nnnnnnnnnnnnntatcttcaaaagagtgtaaagtgggttaaacagttctttccttaaagtaaaataagtc |
410 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26105815 |
caccgttgtcccaaaacaacataaaaaacataaaacaaaaaatatctccaaaagagtgtaaagtgggttaaacagtccgttccttaaagtaaaataagtc |
26105716 |
T |
|
| Q |
411 |
tactaccagtctattatctaacatctcccttcaaactaaagatgcattaacacgaaac |
468 |
Q |
| |
|
|||||| | |||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26105715 |
tactactaatctattatctaacacctcccttgaaactaaagatgcattaacatgaaac |
26105658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 26184870 - 26184757
Alignment:
| Q |
18 |
atctatgaggtggatgtgtggtttttattcctttgagaattgatatttaaattttagtttctgtgactgacatagaatgtttttcaagagaaagtatggg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| |||| ||||||||||| ||||||||| |||| ||||||| |||||||||| ||||||| | || |
|
|
| T |
26184870 |
atctatgaggtggatgtgtggtttt-atttcttggagagttgatatttaagttttagttttggtgagtgacataaaatgtttttccgaagaaagttttgg |
26184772 |
T |
|
| Q |
118 |
atagtcacaagattt |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26184771 |
atagtcacaagattt |
26184757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 26185074 - 26185014
Alignment:
| Q |
217 |
gtaaacgatgcttaaccttatctatcacgagg-attatgaaataatgacacgaactacacg |
276 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
26185074 |
gtaaaggatgcttaaccttgtctgacacgaggtattatgaaataatgacacgagctacacg |
26185014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University