View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_16 (Length: 441)
Name: NF9071_low_16
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 6650006 - 6649613
Alignment:
| Q |
1 |
tgtcagtgcttgcagccaatattttaaaaatcaatctggaaatcgaaccagcaagaccgattgagaggaaactccgaccgaacttctcaaataaccgaac |
100 |
Q |
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| T |
6650006 |
tgtcagtgcttgcagccaatattttaaaaatcaatctggaaat-gaaccagcaagaccaattgagaggaaactgcgaccaaacttctcaaataaccgaac |
6649908 |
T |
|
| Q |
101 |
tttagataatgccggttcacggttcagttagttgagttgttcggtttggtttttaaaacattagtcgctgtgctacagcacaggttgggattggtctttg |
200 |
Q |
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| T |
6649907 |
tttagataatgccggttcacggttcagttagttgagttgttcggtttggtttttaaaacattagttgctgtgctacagcacaggttgggattggtctttg |
6649808 |
T |
|
| Q |
201 |
taatgcttacttgggctggatagcgctcacttctcataagctgtgattttgtgtggttgagttagatctacgagactaaaaccaaattctgagttagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6649807 |
taatgcttacttgggctggatagcgctcacttctcataagctgtgattttgtgtggttgagttagatctacgagactaaaaccaaattctgagttagaaa |
6649708 |
T |
|
| Q |
301 |
aagacacaatttttagcatacatgaacctactatgattggttgtaagatccattagttcttagttatattagaaaaaggaatgtggattcaaatc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6649707 |
aagacacaatttttagcatacatgaacctactatgattggttgtaagatccattagttcttagttatattagaaaaaggaatgtggattcaaatc |
6649613 |
T |
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