View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_19 (Length: 436)
Name: NF9071_low_19
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 34969719 - 34970120
Alignment:
| Q |
18 |
agtatctctttcattcaatcccacttcctttctctcatctttttctcctggggtatttcctttctcctacaaaacataacatattaaaatggcaacttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
34969719 |
agtatctctttcattcaatcccacttccttcctctcatctttttctcttggggtatttcctttctcctacaaaacataaaatattagaatggcaacttgt |
34969818 |
T |
|
| Q |
118 |
tagttggnnnnnnnntgagtaccgttctatttcagcctataggtaaaagaataggaagaataaggagaaggaaactgaaattgcaatgatttaatatata |
217 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34969819 |
tagttggaaaaaaaatgagtacctctctatttcagcctataggtaaaagaataggaagaataaggagaaggaaactgaaattgcaatgatttaatatata |
34969918 |
T |
|
| Q |
218 |
catggtcaatggaaagattttttataccgttaatcaatcatatttatcaaataatttaaaatgcttgacttcaatcataacatatttttaaaaccacaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34969919 |
catggtcaatggaaagattttttataccgtcaatcaatcatatttatcaaataatttaaaatgtttgacttcaatcataacatatttttaaaaccacaca |
34970018 |
T |
|
| Q |
318 |
taatgacattg-------tannnnnnnnacatcattgacaatatattaaacattggataaatgcttgcttatgattatgtattgctgaattattggtctg |
410 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34970019 |
taatgacattgtattttttattttttttgcatcattgacaatatagtaaacattggataaatgcttgcttatgattatgtattgctgaattattggtttg |
34970118 |
T |
|
| Q |
411 |
tg |
412 |
Q |
| |
|
|| |
|
|
| T |
34970119 |
tg |
34970120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University