View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_21 (Length: 405)
Name: NF9071_low_21
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 36522348 - 36522741
Alignment:
| Q |
1 |
aacttgaactcactcaaacattcctcccataaaacctttgcatccaaactaaacaccttcctaacctcatgtttttaaattgtagttgcgatcgcgtcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36522348 |
aacttgaactcactcaaacattcctcccataaaacttttgcatccaaaccaaacaccttcctaacctcatgtttttaaattgcagttgcgatcgcgtcac |
36522447 |
T |
|
| Q |
101 |
aattctagatattgcgatcgaatattatatcgctggccaagatcgcaatcgcggacctttt-tcccattagaatcatcactatttatatatgatgcaata |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36522448 |
aattctagatattgcgatcaaatattatatcgctggccaagatcgcaatcgcggaccttttttcccattagaatcatcactatttacatatgatgcaata |
36522547 |
T |
|
| Q |
200 |
aatcttaaaaatttgagatatttgctcactgattttttgtttcacaatttccattatgtcctcgtgtcagacaaaacatcttaaacagaaacataacaag |
299 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36522548 |
aatcttacaaatttgagatatttgctcactgattttttgtttcacaatttccattatgtcctcgtgtcagacaaaacatcttaaacagaaacataacaag |
36522647 |
T |
|
| Q |
300 |
atcagaaaacgaggttgttcctccacttcttctccatctcccttttcaataagatatagatttaagagagccattttgatgggaaagaagagtg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36522648 |
atcagaaaacgaggttgttcctccacttcttcttcatcacccttttcaagaagatatagatttaagagagccattttgatgggaaagaaaagtg |
36522741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University