View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9071_low_22 (Length: 398)

Name: NF9071_low_22
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9071_low_22
NF9071_low_22
[»] chr3 (5 HSPs)
chr3 (17-334)||(43694294-43694614)
chr3 (33-334)||(43685255-43685552)
chr3 (368-398)||(42636277-42636307)
chr3 (330-359)||(43694733-43694762)
chr3 (366-398)||(12349043-12349075)
[»] scaffold1089 (1 HSPs)
scaffold1089 (263-334)||(1599-1670)
[»] chr6 (5 HSPs)
chr6 (263-334)||(14439240-14439311)
chr6 (368-398)||(15276856-15276886)
chr6 (107-184)||(14439087-14439164)
chr6 (258-334)||(15398223-15398299)
chr6 (258-334)||(15410010-15410086)
[»] chr5 (2 HSPs)
chr5 (281-334)||(25613318-25613371)
chr5 (368-398)||(7208116-7208146)
[»] chr7 (4 HSPs)
chr7 (368-398)||(1870319-1870349)
chr7 (368-398)||(9913708-9913738)
chr7 (368-398)||(9927396-9927426)
chr7 (366-398)||(29661506-29661538)
[»] chr1 (2 HSPs)
chr1 (156-189)||(37997505-37997538)
chr1 (261-305)||(37997607-37997651)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 43694294 - 43694614
Alignment:
Q  17 acaaacttctcgacatgtcgcagtttcggggcggcggcttctacccatgcagatacgttggagggagagggactattaaatttgcggcgtagaaaacaac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43694294 acaaacttctcgacatgtcgcagtttcggggcggcggcttctacccatgcagatacgttggagggagagggactattaaatttgcggagtagaaaacaac 43694393  T
Q  117 agttgaggctaaacgttttaatggtttggtttgacacgcgaggagagagcatgagagtatctataaaacgacataagtgattgaaggagttatggtttct 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43694394 agttgaggctaaacgttttaatggtttggtttgacacacgaggagagagcatgagagtatctataaaacgacataagtgattgaatgagttatggtttct 43694493  T
Q  217 cacggtttcatgattgaagcggaagcggagaacagcgagtg---agaagagtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtc 313  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43694494 cacggtttcatgattgaagcggaagcggagaacagcgagtgaatagaagagtggggtccaccgctttgaaagaacagtggtggtcaaagcgaatatggtc 43694593  T
Q  314 ggaataaaagagagtatgtga 334  Q
    |||||||||||||||||||||    
T  43694594 ggaataaaagagagtatgtga 43694614  T

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Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 33 - 334
Target Start/End: Original strand, 43685255 - 43685552
Alignment:
Q  33 gtcgcagtttcggggcggcggcttctacccatgcagatacgttggagggagagggactattaaatttgcggcgtagaaaacaacagttgaggctaaacgt 132  Q
    |||||||||| | |||||||||||||||| ||||||||||||||||||||      ||||||| |||||||  |  | ||  |||||||||| |||||||    
T  43685255 gtcgcagttttgcggcggcggcttctacc-atgcagatacgttggaggga------ctattaagtttgcggtatgaataaagacagttgaggttaaacgt 43685347  T
Q  133 tttaatggtttggtttgacacgcgaggagagagcatgagagtatctataaaacgacataagtgattgaaggagttatggtttctcacggtttcatgattg 232  Q
    |||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||| ||||||||||||  |||    
T  43685348 tttaatgggttggtttgacccacgaggagagagcatgagagtatcgataaaacgacagaagtgattgaatgagttatcgtttttcacggtttcatcgttg 43685447  T
Q  233 aagcggaagcggagaacagcgagt---gagaagagtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagta 329  Q
    |||  ||||| |||||||| ||||    |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  43685448 aagttgaagcagagaacagtgagtaaatagaatagtggggtccaccgcattgaaagaacagtggtggtgaaagcgagtatggtcggaagaaaggagagta 43685547  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 42636277 - 42636307
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  42636277 gggtgcatttgatttgctaaaaaatgaagga 42636307  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 43694733 - 43694762
Alignment:
Q  330 tgtgagagtgtggtgggatgctacaattta 359  Q
    ||||||||||||||||||||||||||||||    
T  43694733 tgtgagagtgtggtgggatgctacaattta 43694762  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 12349043 - 12349075
Alignment:
Q  366 acgggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||| ||||||||||||||||||||||||    
T  12349043 acgggtgcgtttgatttgctaaaaaatgaagga 12349075  T

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Target: scaffold1089 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 1599 - 1670
Alignment:
Q  263 agtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagtatgtga 334  Q
    ||||||||||||||||| |||||||| ||||| |||||||||| | |||| |||| ||||||||||||||||    
T  1599 agtggggtccaccgcttcgaaagaactgtggtagtgaaagcgattttggtgggaagaaaagagagtatgtga 1670  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 14439240 - 14439311
Alignment:
Q  263 agtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagtatgtga 334  Q
    ||||||||||||||||| ||||||||  |||| |||||||||| | |||| |||| ||||||||||||||||    
T  14439240 agtggggtccaccgcttcgaaagaactctggtagtgaaagcgattttggtgggaagaaaagagagtatgtga 14439311  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 15276856 - 15276886
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  15276856 gggtgcatttgatttgctaaaaaatgaagga 15276886  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 14439087 - 14439164
Alignment:
Q  107 agaaaacaacagttgaggctaaacgttttaatggtttggtttgacacgcgaggagagagcatgagagtatctataaaa 184  Q
    ||||||| ||| || ||||||||  |||| |||  || ||||||||  ||||||||||||||||| ||||||||||||    
T  14439087 agaaaactacacttaaggctaaatattttgatgaatttgtttgacagacgaggagagagcatgagtgtatctataaaa 14439164  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 15398299 - 15398223
Alignment:
Q  258 agaagagtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagtatgtga 334  Q
    |||||||||||||||||||||| |||||||  || || || ||||| ||| | || || | ||||||||||||||||    
T  15398299 agaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtga 15398223  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 15410086 - 15410010
Alignment:
Q  258 agaagagtggggtccaccgctttgaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagtatgtga 334  Q
    |||||||||||||||||||||| |||||||  || || || ||||| ||| | || || | ||||||||||||||||    
T  15410086 agaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtga 15410010  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 25613371 - 25613318
Alignment:
Q  281 gaaagaacagtggtggtgaaagcgaatatggtcggaataaaagagagtatgtga 334  Q
    |||||||| |||||||||||||||||| |||| |||| || |||||||||||||    
T  25613371 gaaagaacggtggtggtgaaagcgaatttggttggaagaagagagagtatgtga 25613318  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 7208116 - 7208146
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  7208116 gggtgcatttgatttgctaaaaaatgaagga 7208146  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 1870349 - 1870319
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  1870349 gggtgcatttgatttgctaaaaaatgaagga 1870319  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 9913738 - 9913708
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  9913738 gggtgcatttgatttgctaaaaaatgaagga 9913708  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Complemental strand, 9927426 - 9927396
Alignment:
Q  368 gggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||||||||||||||||||||||||||    
T  9927426 gggtgcatttgatttgctaaaaaatgaagga 9927396  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 29661538 - 29661506
Alignment:
Q  366 acgggtgcatttgatttgctaaaaaatgaagga 398  Q
    |||||||| ||||||||||||||||||||||||    
T  29661538 acgggtgcgtttgatttgctaaaaaatgaagga 29661506  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 37997505 - 37997538
Alignment:
Q  156 gaggagagagcatgagagtatctataaaacgaca 189  Q
    |||||||||||||||||||||| |||||||||||    
T  37997505 gaggagagagcatgagagtatccataaaacgaca 37997538  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 37997607 - 37997651
Alignment:
Q  261 agagtggggtccaccgctttgaaagaacagtggtggtgaaagcga 305  Q
    ||||| ||||||||||||||||||||||||| || || |||||||    
T  37997607 agagtagggtccaccgctttgaaagaacagttgtagtaaaagcga 37997651  T

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