View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_25 (Length: 317)
Name: NF9071_low_25
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 32587404 - 32587146
Alignment:
| Q |
22 |
aggatctatgattggttggttaactctaacaaaaatgannnnnnngtttgacatctaaattatgatgtcgaaatgtgtttagcacatacagtgcactgtg |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32587404 |
aggatctatgactggttggttaactctaacaaaaattatttttttgtttgacatctaaattatgatgtcgaaatgtgtttagcacataca---------- |
32587315 |
T |
|
| Q |
122 |
actttaacacttcctcaattgggtttttcacctgtatagcattaacacttctaattgaagttgcgtctactttccaacatcgacacgacactgacactga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||| |
|
|
| T |
32587314 |
-ctttaacacttcctcaattgggtttttcacctgtatagcattaacacttctaattgaaggtgtgtctactgtccaacatcg-----acactgacactga |
32587221 |
T |
|
| Q |
222 |
cacatgggattacattcaattatgttttgacatcagattataaattgctaaactcaacaacacacatatcagcagcac |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
32587220 |
cacatgtgattacattcaattatgttttgacatcagattataaattgctaaact---caacacacagatcagcagcac |
32587146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 32638506 - 32638457
Alignment:
| Q |
194 |
tccaacatcgacacgacactgacactgacacatgggattacattcaattat |
244 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
32638506 |
tccaacaccgacacgacac-gacactgacacatgtgattacattcaattat |
32638457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 32638579 - 32638544
Alignment:
| Q |
146 |
ttttcacctgtatagcattaacacttctaattgaag |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32638579 |
ttttcacctgtatagcatcaacacttctaattgaag |
32638544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 39621490 - 39621527
Alignment:
| Q |
209 |
acactgacactgacacatgggattacattcaattatgt |
246 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
39621490 |
acacagacactgacacatgtgattacattcaattatgt |
39621527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University