View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_30 (Length: 271)
Name: NF9071_low_30
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 9378590 - 9378861
Alignment:
| Q |
1 |
aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc |
100 |
Q |
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| T |
9378590 |
aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc |
9378689 |
T |
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| Q |
101 |
ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaag------------------acacaaac |
182 |
Q |
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| T |
9378690 |
ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacacaaacacaaacacaaacacaaac |
9378789 |
T |
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| Q |
183 |
acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378790 |
acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatat |
9378861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 8185709 - 8185779
Alignment:
| Q |
53 |
aggaccaataagttttggatataaagctagcaattga-tgagtttaatcttcccctcatgataagaactca |
122 |
Q |
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||||||||| ||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||| |
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| T |
8185709 |
aggaccaatgagttttggatataaagctagcaattgagggggttaaatctgatcctcatgataagaactca |
8185779 |
T |
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