View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_31 (Length: 264)
Name: NF9071_low_31
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 6649998 - 6650236
Alignment:
| Q |
1 |
gcactgacacatacacgaacacctaacacgacatgactctgacacatcaacaccggtaataattttaaaaatagaagcaatagaatgtaatcgcatgtgt |
100 |
Q |
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| T |
6649998 |
gcactgacacatacacgaacacctaacacgacatgactctgacacatcaacaccggtaataattttaaaaatagaagcaatagaatgtaatcacatgtgt |
6650097 |
T |
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| Q |
101 |
cggttttcaacactaacgcatgtcagacaccggacatgcataaatctaaagggttagcgaaagtataacaaattgcagggtggctacaattcaggagaat |
200 |
Q |
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| T |
6650098 |
aggtgttcaacactaacacatgtcagacaccggacatgcataaatct------------aaagtataacaaattgcagggtggctacaattcaggagaat |
6650185 |
T |
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| Q |
201 |
tttacataatcaacatgaattgatgaataaatctacaacactaccaccaaa |
251 |
Q |
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| T |
6650186 |
tttacataatcaacatgaattgatgaataaatctacaacactaccaccaaa |
6650236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 29519176 - 29519217
Alignment:
| Q |
30 |
gacatgactctgacacatcaacaccggtaataattttaaaaa |
71 |
Q |
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| T |
29519176 |
gacatgacactgacacgtcaacaccgataataattttaaaaa |
29519217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 10356855 - 10356918
Alignment:
| Q |
40 |
tgacacatcaacaccggtaataattttaaaaatagaagcaatagaatgtaatcgcatgtgtcggt |
104 |
Q |
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| T |
10356855 |
tgacacatcagcaccggtaataatttgaaaatta-aattaattgaatgtaatcacatgtgtcggt |
10356918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 27587892 - 27587936
Alignment:
| Q |
27 |
cacgacatgactctgacacatcaacaccggtaataattttaaaaa |
71 |
Q |
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| T |
27587892 |
cacgacttgacactgacacatcaacaccagtaataatttgaaaaa |
27587936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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