View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_38 (Length: 238)
Name: NF9071_low_38
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36790049 - 36790270
Alignment:
| Q |
1 |
aaacgattgaagcccaagtggttagcacgtaaaatgtgtgagtgttataaattttagttttcacttacaaagaaaaacagcttttgttttgccaagtatg |
100 |
Q |
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| T |
36790049 |
aaacgattgaagcccaagtggttagcacgtaaaatgtgtgagtgttataaattttagttttcacttacaaagaaaaacagcatttgttttgccaagtatg |
36790148 |
T |
|
| Q |
101 |
tttgtggtgtcacatgatattgtctttgtcgagcacgatcgagaagtgcaagtttataaaccccttgttagttttcactctcctaactctgacatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
36790149 |
tttgtggtgtcacatgatattgtctttgtcgagcacgatcgaaaagtgcaagtttataaaccccttgttggttttcaccctcctaactctgacatgtttg |
36790248 |
T |
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| Q |
201 |
tcgcttccaaaagccttgtatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36790249 |
tcgcttccaaaagccttgtatg |
36790270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 27094316 - 27094380
Alignment:
| Q |
117 |
atattgtctttgtcgagcacgatcgagaagtgcaagtttataaaccccttgttagttttcactct |
181 |
Q |
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| T |
27094316 |
atattgtctttgtcaagcacgtttgagaagtgcaagtttataaaccccttgttagttttcactct |
27094380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 13805786 - 13805826
Alignment:
| Q |
141 |
gagaagtgcaagtttataaaccccttgttagttttcactct |
181 |
Q |
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| T |
13805786 |
gagaagtgcaagtttataaaccccttgttagttttcactct |
13805826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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