View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_39 (Length: 228)
Name: NF9071_low_39
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_39 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15930 - 15719
Alignment:
| Q |
1 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccagtttgatccttgtatttttggatgatccctttgagtgaagacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15930 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacac |
15831 |
T |
|
| Q |
101 |
agcctgcgaaatccagatattttcctcaacaggattgaatggagttttaacagtgtcattacctccaatgcttattatcaccttcacatttggattattt |
200 |
Q |
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| T |
15830 |
agcccgcgtaatccagatagtttcctcaacaggattgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattattt |
15731 |
T |
|
| Q |
201 |
cccttcaaattt |
212 |
Q |
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|||||||||||| |
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| T |
15730 |
cccttcaaattt |
15719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26098 - 25887
Alignment:
| Q |
1 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccagtttgatccttgtatttttggatgatccctttgagtgaagacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26098 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacac |
25999 |
T |
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| Q |
101 |
agcctgcgaaatccagatattttcctcaacaggattgaatggagttttaacagtgtcattacctccaatgcttattatcaccttcacatttggattattt |
200 |
Q |
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| T |
25998 |
agcccgcgtaatccagatagtttcctcaacaggattgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattattt |
25899 |
T |
|
| Q |
201 |
cccttcaaattt |
212 |
Q |
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|||||||||||| |
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| T |
25898 |
cccttcaaattt |
25887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 36264 - 36053
Alignment:
| Q |
1 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccagtttgatccttgtatttttggatgatccctttgagtgaagacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36264 |
ttgtagtatggaagacgttaagataattaatgtcaatgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacac |
36165 |
T |
|
| Q |
101 |
agcctgcgaaatccagatattttcctcaacaggattgaatggagttttaacagtgtcattacctccaatgcttattatcaccttcacatttggattattt |
200 |
Q |
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|||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36164 |
agcccgcgtaatccagatagtttcctcaacaggattgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattattt |
36065 |
T |
|
| Q |
201 |
cccttcaaattt |
212 |
Q |
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|||||||||||| |
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|
| T |
36064 |
cccttcaaattt |
36053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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