View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9071_low_40 (Length: 226)

Name: NF9071_low_40
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9071_low_40
NF9071_low_40
[»] chr7 (11 HSPs)
chr7 (1-202)||(35982440-35982641)
chr7 (1-202)||(36003852-36004053)
chr7 (1-202)||(36226319-36226520)
chr7 (1-186)||(35958417-35958602)
chr7 (1-186)||(35977872-35978057)
chr7 (1-186)||(35999284-35999469)
chr7 (9-202)||(36217062-36217255)
chr7 (1-181)||(35947212-35947392)
chr7 (1-122)||(36221127-36221248)
chr7 (55-202)||(35973792-35973939)
chr7 (55-202)||(35995204-35995351)
[»] chr1 (1 HSPs)
chr1 (9-186)||(18126139-18126316)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35982440 - 35982641
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  35982440 tgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttc 35982539  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagcaaatgcattgaatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35982540 gtccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatccattgaatacatcttcagcatcagagcaaatgcattgaatct 35982639  T
Q  201 gc 202  Q
    ||    
T  35982640 gc 35982641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36003852 - 36004053
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  36003852 tgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttc 36003951  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagcaaatgcattgaatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36003952 gtccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatccattgaatacatcttcagcatcagagcaaatgcattgaatct 36004051  T
Q  201 gc 202  Q
    ||    
T  36004052 gc 36004053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36226319 - 36226520
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| ||| |||||||| |||||| ||||||||||||   |||||| ||| |||||||||||||||| ||||||||||||| || |||||| |||||    
T  36226319 tgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactagaggaagaaaaaaattggcgtaccttc 36226418  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagcaaatgcattgaatct 200  Q
     ||| ||||||||  |||||||| ||||||||||||||||||||| ||||  |||||||||| | ||||| ||||||||||||||||||| |||||||||    
T  36226419 atcctagtgctgcatgaagcttccacaacttgctttcgtttgtcttgaaattcaaatccatccagtacatattcagcatcagagcaaatgtattgaatct 36226518  T
Q  201 gc 202  Q
    ||    
T  36226519 gc 36226520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35958417 - 35958602
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||||||||||| |||||| ||||||||| | ||||||||  ||| |||||||||||||| ||||||||||||||| ||||||||| |||||    
T  35958417 tgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtaccttc 35958516  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagca 186  Q
      ||| ||||| ||||||||||| |||||||| ||||| |||||| | ||  |||||||||| |||||||||||||||||| ||||    
T  35958517 acccgtgtgcttccagaagcttccacaacttgttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagca 35958602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35977872 - 35978057
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||||| ||||| |||||| ||||||||| || | |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  35977872 tgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttc 35977971  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagca 186  Q
      |||  |||| | ||||||||  |||||||||||||| |||||| | ||   ||||||||| |||||||||||||||||| ||||    
T  35977972 acccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagca 35978057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35999284 - 35999469
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||||| ||||| |||||| ||||||||| || | |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  35999284 tgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgtaccttc 35999383  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagca 186  Q
      |||  |||| | ||||||||  |||||||||||||| |||||| | ||   ||||||||| |||||||||||||||||| ||||    
T  35999384 acccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagca 35999469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 36217255 - 36217062
Alignment:
Q  9 tatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttcgtccgagt 108  Q
    ||||||||||||  ||||| ||||||||| || | | |||||||| |||||||||||| ||||||||||||||||||||||||| | |||||  ||| ||    
T  36217255 tatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgt 36217156  T
Q  109 gctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagcaaatgcattgaatctgc 202  Q
    ||| ||||||||||| |||| ||||||||   ||||| | ||| |||||||||| |||||||||||||||||| |||| |||  ||||||||||    
T  36217155 gcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctgc 36217062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 35947212 - 35947392
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| |||||| ||||| |||||| ||||||||| || | |||||||||| ||| ||| |||||||||||||||||||||||||||||  |  ||||    
T  35947212 tgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggactaacttc 35947311  T
Q  101 gtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatca 181  Q
      ||| ||||| | ||||||||  |||||||||||||| |||||| | ||   ||||||||| ||||||||||||||||||    
T  35947312 acccgtgtgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatca 35947392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 36221248 - 36221127
Alignment:
Q  1 tgccaccgtatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttc 100  Q
    ||||||| ||| ||||||||  ||||| |||||||||  ||| | |||||||| ||||||||| |||||||| ||||||||||| ||||||| | |||||    
T  36221248 tgccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttc 36221149  T
Q  101 gtccgagtgctgccagaagctt 122  Q
     | |||||||||||||||||||    
T  36221148 attcgagtgctgccagaagctt 36221127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 35973792 - 35973939
Alignment:
Q  55 acggaaagcaagtggattagaggaagaaaagaagtggcgttccttcgtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaaccca 154  Q
    ||||||| |||||||||| ||||| |||||||||| || | ||||| | |  |||||||||||||| || |||| ||  || || |||| | | |   ||    
T  35973792 acggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgtgctgccagaagcatccacaaattttttccgcttgtgttggagttca 35973891  T
Q  155 aatccatcgaatacatcttcagcatcagagcaaatgcattgaatctgc 202  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||||||    
T  35973892 aatccatcaaatacatcttcagcatcggagcagatgttttgaatctgc 35973939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 35995204 - 35995351
Alignment:
Q  55 acggaaagcaagtggattagaggaagaaaagaagtggcgttccttcgtccgagtgctgccagaagcttcgacaacttgctttcgtttgtctcgaaaccca 154  Q
    ||||||| |||||||||| ||||| |||||||||| || | ||||| | |  |||||||||||||| || |||| ||  || || |||| | | |   ||    
T  35995204 acggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgtgctgccagaagcatccacaaattttttccgcttgtgttggagttca 35995303  T
Q  155 aatccatcgaatacatcttcagcatcagagcaaatgcattgaatctgc 202  Q
    |||||||| ||||||||||||||||| ||||| |||  ||||||||||    
T  35995304 aatccatcaaatacatcttcagcatcggagcagatgttttgaatctgc 35995351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 18126139 - 18126316
Alignment:
Q  9 tatccaatctattcctaatttctttgattcgatgcgccatcctaagacggaaagcaagtggattagaggaagaaaagaagtggcgttccttcgtccgagt 108  Q
    |||||||||||| |||||| ||||| ||| | |  |||||||||||||| |||||||||| ||| |||||| | |||||||||||| ||||| | | | |    
T  18126139 tatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattggaggaacagaagaagtggcgtaccttcattctatt 18126238  T
Q  109 gctgccagaagcttcgacaacttgctttcgtttgtctcgaaacccaaatccatcgaatacatcttcagcatcagagca 186  Q
     || |  ||||||| || |||||||||||| |||| | | | | |||||   || |||||||||||||||||| ||||    
T  18126239 actacacgaagctttgagaacttgctttcgcttgtgttggagctcaaatttttccaatacatcttcagcatcatagca 18126316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University