View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_43 (Length: 220)
Name: NF9071_low_43
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 28385878 - 28386077
Alignment:
| Q |
1 |
agcctgtacttttaagcactgtgtcaagcatcattcctatgagcatgctgagaacctttggtggtttactacacaaggtaatattatcatgatgaagatt |
100 |
Q |
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| T |
28385878 |
agcctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacacaaggtaatattatcatgatgaagatt |
28385977 |
T |
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| Q |
101 |
tggaacgacatatgaacttgaatctgaatcagcatcagcatctgtatggagtaaattgtttgttcgaagggaatgaaagatcgagacagcaaagagagac |
200 |
Q |
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| T |
28385978 |
tggaacgacatatgaacttgaatctgaatcagcatcagcatctgtatgaagtaaattgtttgttcgaagagaatgaaagatcgagacagcaaagagagac |
28386077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 12541229 - 12541397
Alignment:
| Q |
1 |
agcctgtacttttaagcactgtgtcaagcatcattcctatgagcatgctgagaacctttggtggtttactacacaaggtaatattatcatgatgaagatt |
100 |
Q |
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| T |
12541229 |
agcctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtga---tacgatgaggaaaatt |
12541325 |
T |
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| Q |
101 |
tggaacgacatatgaacttgaatctgaatcagcatcagcatctgtatggagtaaattgtttgttcgaaggga |
172 |
Q |
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| T |
12541326 |
tggaacgacatacgaacttgaatccgaatcagaatcagaattggtatgaagcaaattgttttttctaaggga |
12541397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 3417159 - 3417091
Alignment:
| Q |
7 |
tacttttaagcactgtgtcaagcatcattcctatgagcatgctgagaacctttggtggtttactacaca |
75 |
Q |
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||||||| | ||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||| |
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| T |
3417159 |
tacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcaca |
3417091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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