View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_46 (Length: 213)
Name: NF9071_low_46
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_46 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52582973 - 52583185
Alignment:
| Q |
1 |
agcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagca |
100 |
Q |
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| T |
52582973 |
agcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagca |
52583072 |
T |
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| Q |
101 |
cgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtct |
200 |
Q |
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| T |
52583073 |
cgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtct |
52583172 |
T |
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| Q |
201 |
gtctattattatc |
213 |
Q |
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| T |
52583173 |
gtctattattatc |
52583185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 52591061 - 52591105
Alignment:
| Q |
66 |
cttacggatgaagaaagtgctcaaagagccaagcacgaagaattg |
110 |
Q |
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| T |
52591061 |
cttacggattaagaaaatgttcaaagagccaagcacgaagtattg |
52591105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 43242984 - 43242935
Alignment:
| Q |
86 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctct |
135 |
Q |
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| T |
43242984 |
tcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctct |
43242935 |
T |
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