View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_48 (Length: 202)
Name: NF9071_low_48
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_48 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 45410765 - 45410596
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
45410765 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
45410666 |
T |
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| Q |
115 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaagttat |
184 |
Q |
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| T |
45410665 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaagttat |
45410596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 45420074 - 45419906
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
45420074 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
45419975 |
T |
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| Q |
115 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaagtta |
183 |
Q |
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| T |
45419974 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaggtta |
45419906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 29799821 - 29799689
Alignment:
| Q |
23 |
ttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatgg |
122 |
Q |
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| T |
29799821 |
ttcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatgg |
29799722 |
T |
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| Q |
123 |
agtacaagatagtgttaacaatacttctctcta |
155 |
Q |
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| T |
29799721 |
agtataagatagtgttaacccttcttctctcta |
29799689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 26835265 - 26835097
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
26835265 |
cagagaggttcgtcgatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
26835166 |
T |
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| Q |
115 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaagtta |
183 |
Q |
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| T |
26835165 |
atttatggagtacaagatagtattaacaatgcttctctctaacttcacttttaaggtttcgccaggtta |
26835097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 63592 - 63457
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
63592 |
cagagaggttcatgaatgatgccaatggggaatgccaccacacaatggggtacttgccttttggttttggagggagagcatgtattggtaggaacttgat |
63493 |
T |
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| Q |
115 |
atttatggagtacaagatagtgttaacaatacttct |
150 |
Q |
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| T |
63492 |
cttcatggagtataacatagtgttaaccctacttct |
63457 |
T |
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