View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_49 (Length: 201)
Name: NF9071_low_49
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_49 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0005 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 205758 - 205576
Alignment:
| Q |
12 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctatcatgttcgatcagaatcttgtactacctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
205758 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctaacatgttcgatcagaatcttgtacttcctt |
205659 |
T |
|
| Q |
112 |
ttcgcagaagctccgagttctcagagggtannnnnnnnnnnnnncatttgtctatttctcttcgattttaggtgatgtccatc |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
205658 |
ttcgcagaagctccgagttctcagatggtattttttttatttttcatttgtctatttctcttcgattttaggtgttgttcatc |
205576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 14611619 - 14611801
Alignment:
| Q |
12 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctatcatgttcgatcagaatcttgtactacctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
14611619 |
gacatcaagaaccaacaccaacgtgcactttccaccggaagtctagtccattctcctactcaatctcctaacatgttcgatcagaatcttgtacttcctt |
14611718 |
T |
|
| Q |
112 |
ttcgcagaagctccgagttctcagagggtannnnnnnnnnnnnncatttgtctatttctcttcgattttaggtgatgtccatc |
194 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
14611719 |
ttcgcagaagctccgagttctcagatggtattttttttatttttcatttgtctatttctcttcgattttaggtgttgttcatc |
14611801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University