View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9071_low_5 (Length: 763)

Name: NF9071_low_5
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9071_low_5
NF9071_low_5
[»] chr7 (9 HSPs)
chr7 (13-746)||(44551539-44552272)
chr7 (136-256)||(5127-5247)
chr7 (213-261)||(5060846-5060894)
chr7 (225-260)||(38790883-38790918)
chr7 (138-255)||(38386178-38386295)
chr7 (213-261)||(20379700-20379748)
chr7 (213-261)||(42548159-42548207)
chr7 (136-190)||(38047715-38047769)
chr7 (214-259)||(33839475-33839520)
[»] chr4 (14 HSPs)
chr4 (23-259)||(628088-628324)
chr4 (24-253)||(40923737-40923966)
chr4 (100-259)||(37577159-37577318)
chr4 (121-261)||(37030907-37031047)
chr4 (69-143)||(628255-628329)
chr4 (136-256)||(24974101-24974221)
chr4 (23-92)||(40923787-40923856)
chr4 (75-259)||(51719668-51719852)
chr4 (136-190)||(12586753-12586807)
chr4 (214-259)||(34235737-34235782)
chr4 (136-259)||(55527868-55527991)
chr4 (212-242)||(53265809-53265839)
chr4 (214-259)||(33164538-33164583)
chr4 (214-259)||(54208180-54208225)
[»] chr8 (10 HSPs)
chr8 (16-261)||(9387765-9388010)
chr8 (77-259)||(9418587-9418769)
chr8 (20-92)||(9418703-9418775)
chr8 (136-260)||(5967192-5967316)
chr8 (213-259)||(33220819-33220865)
chr8 (214-259)||(31762241-31762286)
chr8 (214-259)||(33220024-33220068)
chr8 (225-260)||(23559027-23559062)
chr8 (136-259)||(34279516-34279639)
chr8 (214-259)||(43641006-43641051)
[»] chr2 (11 HSPs)
chr2 (22-255)||(25678729-25678962)
chr2 (23-259)||(24929175-24929411)
chr2 (74-259)||(943137-943321)
chr2 (14-92)||(943128-943206)
chr2 (68-143)||(24929169-24929244)
chr2 (213-259)||(37893040-37893086)
chr2 (214-259)||(8273245-8273290)
chr2 (213-261)||(20685004-20685052)
chr2 (214-261)||(38225727-38225774)
chr2 (213-259)||(20686834-20686880)
chr2 (213-258)||(12969296-12969340)
[»] scaffold0246 (2 HSPs)
scaffold0246 (49-261)||(2721-2933)
scaffold0246 (23-92)||(2746-2815)
[»] chr3 (23 HSPs)
chr3 (74-260)||(44430417-44430603)
chr3 (74-187)||(13840617-13840730)
chr3 (79-259)||(3860246-3860445)
chr3 (127-242)||(50664131-50664246)
chr3 (74-259)||(39685212-39685378)
chr3 (74-260)||(53814454-53814640)
chr3 (19-92)||(13840613-13840686)
chr3 (19-92)||(39685309-39685382)
chr3 (22-91)||(44430535-44430604)
chr3 (183-258)||(13843595-13843670)
chr3 (28-92)||(3860381-3860445)
chr3 (214-262)||(15040678-15040726)
chr3 (213-260)||(4969874-4969921)
chr3 (127-261)||(21566895-21567029)
chr3 (214-261)||(44836511-44836558)
chr3 (213-259)||(6162714-6162760)
chr3 (136-190)||(7665802-7665856)
chr3 (214-264)||(16931441-16931491)
chr3 (214-259)||(40517556-40517601)
chr3 (214-261)||(26998320-26998367)
chr3 (13-55)||(3860437-3860479)
chr3 (214-259)||(35069479-35069524)
chr3 (214-259)||(35485243-35485288)
[»] scaffold0041 (2 HSPs)
scaffold0041 (74-259)||(23487-23672)
scaffold0041 (13-90)||(23605-23682)
[»] chr1 (16 HSPs)
chr1 (74-259)||(49030232-49030418)
chr1 (13-92)||(49030349-49030428)
chr1 (99-259)||(28446449-28446608)
chr1 (213-259)||(11821160-11821206)
chr1 (214-259)||(39650196-39650241)
chr1 (136-260)||(33401407-33401531)
chr1 (136-260)||(33617643-33617767)
chr1 (214-260)||(49033763-49033809)
chr1 (214-259)||(5119064-5119109)
chr1 (225-261)||(3792498-3792534)
chr1 (213-261)||(45688306-45688354)
chr1 (213-259)||(3792560-3792606)
chr1 (214-260)||(28476015-28476061)
chr1 (213-259)||(45691080-45691126)
chr1 (213-259)||(45691222-45691268)
chr1 (213-259)||(45691364-45691410)
[»] chr6 (8 HSPs)
chr6 (13-132)||(25403890-25404009)
chr6 (74-231)||(25403900-25404057)
chr6 (96-261)||(17436456-17436621)
chr6 (127-259)||(24326944-24327076)
chr6 (214-259)||(807202-807247)
chr6 (214-259)||(31522568-31522613)
chr6 (214-259)||(32275804-32275849)
chr6 (214-260)||(14153353-14153399)
[»] chr5 (6 HSPs)
chr5 (127-259)||(36933168-36933300)
chr5 (136-260)||(28677885-28678009)
chr5 (75-253)||(6705929-6706107)
chr5 (214-258)||(4845302-4845346)
chr5 (214-261)||(1145139-1145186)
chr5 (214-259)||(34016002-34016047)
[»] scaffold1763 (1 HSPs)
scaffold1763 (213-263)||(396-446)
[»] scaffold1063 (1 HSPs)
scaffold1063 (213-259)||(1475-1521)


Alignment Details
Target: chr7 (Bit Score: 657; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 13 - 746
Target Start/End: Complemental strand, 44552272 - 44551539
Alignment:
Q  13 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 112  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44552272 cagagacagaactagcatgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagttaagtaacgtgacttaagttgc 44552173  T
Q  113 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  44552172 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaaggataaaaaggtc 44552073  T
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttctaagaataaaacaaccaa 312  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44552072 ttttattttaagaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttttaagaataaaacaaccaa 44551973  T
Q  313 ttatgtatgatgacgaaatatgagattaatatgtgtgtccaaagatatttatatctaattattcaatatttaaattcnnnnnnnagcaatgataaatcgt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  44551972 ttatgtatgatgacgaaatatgagattaatatgtgtgtccaaagatatttatatctaattattcaatatttaaattctttttttagcaatgataaatcgt 44551873  T
Q  413 aagagtttaatttccatgcattatcaatactgtatatcagaagtaaatttagaaatgattataataaaattaacaaatatattacgaatcttttttgata 512  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44551872 aagagtttaatttccatgcattatcaatactgtatatcggaagtaaatttagaaatgattataataaaattaacaaatatattacgaattttttttgata 44551773  T
Q  513 attttggcaaacaaatgtttgcgacgacactttggagtatatggatgaagttgcaattcaaaagtttagggtgataaggatgaatcgacacaagttacta 612  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551772 attttggcaaacaaatgtttgcgacgacactttggtgtatatggatgaagttgcaattcaaaagtttagggtgataaggatgaatcgacacaagttacta 44551673  T
Q  613 ttgacacatgaggagttcctgcaagattggttaaaatgtcaagattgtatcagcgctaagaattttattggaaagattgaatgcggggtatatttgaaag 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44551672 ttgacacatgaggagttcctgcaagattggttaaaatgtcaagattgtatcagcgctaagaattttattggaaagattgaatgcggggtatatttgaaag 44551573  T
Q  713 aaaccaccttaaaattatgttagatacgatgttg 746  Q
    ||||||||||||||||||||||||||| ||||||    
T  44551572 aaaccaccttaaaattatgttagatacaatgttg 44551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 5127 - 5247
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||| | | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||||||     
T  5127 ttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaat 5226  T
Q  236 ccatttggataatgagcagaa 256  Q
    |||||||| ||||||||||||    
T  5227 ccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 5060894 - 5060846
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  5060894 ttttactttgggaatgagcggaaccatttggataatgagtagaattctt 5060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 38790918 - 38790883
Alignment:
Q  225 aatgagcgaaaccatttggataatgagcagaattct 260  Q
    ||||||||||||||||||||||||||||||||||||    
T  38790918 aatgagcgaaaccatttggataatgagcagaattct 38790883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 38386295 - 38386178
Alignment:
Q  138 aagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaacc 237  Q
    |||||||||||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||        |  |||||||| | |||||||||| ||    
T  38386295 aagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatcc 38386196  T
Q  238 atttggataatgagcaga 255  Q
    ||||||||||||||||||    
T  38386195 atttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 20379700 - 20379748
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  20379700 ttttactttgggaatgagcggaaccatttagataatgagcataattctt 20379748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 42548207 - 42548159
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||||||||| ||||||||| |||| |||||| |||||||||||||||||    
T  42548207 ttttactttgggaatgagcaaaacgatttgggtaatgagcagaattctt 42548159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 38047769 - 38047715
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 190  Q
    |||||||||||||| | |||||||| |||||  |||||| |||||||||||||||    
T  38047769 ttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaa 38047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 33839475 - 33839520
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||    
T  33839475 tttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 628324 - 628088
Alignment:
Q  23 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 122  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  628324 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 628225  T
Q  123 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 222  Q
    ||| |||||| ||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||| || ||||||||||    
T  628224 gcactagcgttacttaagtcactctacctgtcttaagtcacattccaatttgaactagcgcatgttaagttgcgtaagggtaaaaaagtcttttacttta 628125  T
Q  223 ggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||||||||||||||| |||||||||||||||    
T  628124 ggaatgagcgaaaccatttgggtaatgagcagaattc 628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 40923737 - 40923966
Alignment:
Q  24 ctagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattg 123  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  40923737 ctagcgtgacttaagtcaagcaacgtgacttaaattgcgttaaattttgcactagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattg 40923836  T
Q  124 cattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttag 223  Q
    || ||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||| |||||| | ||||||| |||||||||||    
T  40923837 cactagcgtgacttaagtcacgctacctgtcttaagtcacattccaatttacattagcgcatgttaagttgtgtaaggataaaaaggtcttttactttag 40923936  T
Q  224 gaatgagcgaaaccatttggataatgagca 253  Q
    |||||||||||||||||||| |||||||||    
T  40923937 gaatgagcgaaaccatttgggtaatgagca 40923966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 37577159 - 37577318
Alignment:
Q  100 tgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaa 199  Q
    |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||  || ||| |||||||||| ||||||||||||||    
T  37577159 tgacttaagttgcgtttcattttgcattagtatgacttaagtcatgctacctgtcttaaatcacgtaccattttacactagcgcaagttaagttgcgtaa 37577258  T
Q  200 gggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  37577259 gggtaaaaagatcttttactttaggaatgagcgaaattatttggataatgagcagaattc 37577318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 121 - 261
Target Start/End: Complemental strand, 37031047 - 37030907
Alignment:
Q  121 ttgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactt 220  Q
    ||||| |||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |||| ||| |||||||| ||||||| ||||||||    
T  37031047 ttgcactagcgtgacttaagtcacgctatctatcttaagtcacgttccaatttgcatttgcgcatattaaattgtgtaagggtaaaaaggtcttttactt 37030948  T
Q  221 taggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    | ||||||||| ||| ||||||| |||||| || |||||||    
T  37030947 tgggaatgagcaaaatcatttgggtaatgaccataattctt 37030907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 628329 - 628255
Alignment:
Q  69 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 143  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  628329 tttgcactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 628255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 24974101 - 24974221
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | |||||||| || ||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||| ||     
T  24974101 ttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaat 24974200  T
Q  236 ccatttggataatgagcagaa 256  Q
    |||||||||||||||||||||    
T  24974201 ccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 40923787 - 40923856
Alignment:
Q  23 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    |||||||||| |||||||||| || |||||||| ||||  ||| || |||||||||||||||||||||||    
T  40923787 actagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattgcactagcgtgacttaagtca 40923856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 51719668 - 51719852
Alignment:
Q  75 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 174  Q
    ||||||||  |||||||| | |||||||||||||||||||| ||| ||| | || ||||| ||||||||||| || | | ||| || |||||  |||||     
T  51719668 ctagcgtggtttaagtcacgcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttacgttacgttgtaattta 51719767  T
Q  175 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    || || |||||||||| || |||| ||||     |||  |||||||| | ||| |||||| |||||||| |||| ||||||||||    
T  51719768 cattaacgcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaatccatttgggtaataagcagaattc 51719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 12586753 - 12586807
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 190  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  12586753 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 12586807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 34235737 - 34235782
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  34235737 tttactttaggaatgagcggaaccatttgggtaatgagcataattc 34235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 55527868 - 55527991
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||| ||||||  |||||| |||      |||  ||| |||| | ||||||||||     
T  55527868 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaat 55527967  T
Q  236 ccatttggataatgagcagaattc 259  Q
    ||||||  ||||||||||||||||    
T  55527968 ccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 53265839 - 53265809
Alignment:
Q  212 attttactttaggaatgagcgaaaccatttg 242  Q
    |||||||||||||||||||||||||||||||    
T  53265839 attttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 33164538 - 33164583
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||  ||||||||| |||||||||| |||||||||||||||    
T  33164538 tttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 54208225 - 54208180
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  54208225 tttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 1e-95; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 9387765 - 9388010
Alignment:
Q  16 agacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtt 115  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9387765 agacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcatt 9387864  T
Q  116 tcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattt 215  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||| ||||||| |||    
T  9387865 tcatattgcactagcgtgacttaagtcatgctacctgtcttaagtcacgttccaatttgcactaacgcatgttaaattgcataagggtaaaaaggtcttt 9387964  T
Q  216 tactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    || ||| ||||||||| ||||||||| | ||||||| |||||||||    
T  9387965 tattttgggaatgagcaaaaccatttaggtaatgagtagaattctt 9388010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 9418769 - 9418587
Alignment:
Q  77 agcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgca 176  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9418769 agcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaatttgca 9418670  T
Q  177 ctagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    || |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9418669 cttgcgcatgttaagttgcgtaagggtaaaatggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaattc 9418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 9418775 - 9418703
Alignment:
Q  20 agaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    ||||| |||||||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||||||||||||    
T  9418775 agaaccagcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtca 9418703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 5967192 - 5967316
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    ||||||||| |||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      | |  |||||||| ||||||||||||     
T  5967192 ttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaat 5967291  T
Q  236 ccatttggataatgagcagaattct 260  Q
    |||||||| ||||||||||||||||    
T  5967292 ccatttgggtaatgagcagaattct 5967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 33220819 - 33220865
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  33220819 ttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 31762286 - 31762241
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||    
T  31762286 tttactttgggaatgagcgaatccatttgaataatgagcagaattc 31762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 33220068 - 33220024
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  33220068 tttacttt-ggaatgagcggaaccatttggataatgagcagaattc 33220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 23559027 - 23559062
Alignment:
Q  225 aatgagcgaaaccatttggataatgagcagaattct 260  Q
    |||||||| |||||||||||||||||||||||||||    
T  23559027 aatgagcggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 34279516 - 34279639
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | |||||||| |||||  ||||||||||| ||||||||||  || ||| |||      | |  |||||||||||||||||||||     
T  34279516 ttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaat 34279615  T
Q  236 ccatttggataatgagcagaattc 259  Q
    ||||||   |||||||||||||||    
T  34279616 ccatttaagtaatgagcagaattc 34279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 43641006 - 43641051
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| | ||||||| ||||||||||| |||||||||||||||    
T  43641006 tttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 8e-91; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 25678729 - 25678962
Alignment:
Q  22 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatat 121  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  25678729 aactagcgtgactcaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtaacttaagttgtgtttcatat 25678828  T
Q  122 tgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttt 221  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  25678829 tgcactagcgtgacttaagtcacgctacatgtcttaagtcacgttccaatttgcacaagcgcatgttaagttgtgtaagggtaaaaaggtcttttacttt 25678928  T
Q  222 aggaatgagcgaaaccatttggataatgagcaga 255  Q
     ||||| ||||||||||||| | |||||||||||    
T  25678929 gggaatcagcgaaaccattttggtaatgagcaga 25678962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 24929175 - 24929411
Alignment:
Q  23 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 122  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24929175 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 24929274  T
Q  123 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 222  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| | ||||| | |||||||||     
T  24929275 gcactagagtgacttaagtcacgctacctgtcttaagtcacgtttcaatttacacaaacgtatgttaagttgcgtaaggataaaaagatcttttactttg 24929374  T
Q  223 ggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||| ||||||||||||| | |||||||||||||||    
T  24929375 ggaatcagcgaaaccattttggtaatgagcagaattc 24929411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 943137 - 943321
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  943137 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattt 943236  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||| ||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||| |||||||||| ||||||||    
T  943237 gcac-agcgcatgttaagttgcgtaagggtaaaaaagtcttttactttatgaatgagcgaaaccatctggataatgaacagaattc 943321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 943128 - 943206
Alignment:
Q  14 agagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||| || |||||||||||||||||||||||    
T  943128 agagacagaactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtca 943206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 24929169 - 24929244
Alignment:
Q  68 ttttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 143  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  24929169 ttttgtactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 24929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 37893040 - 37893086
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  37893040 ttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 8273290 - 8273245
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||    
T  8273290 tttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 20685052 - 20685004
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||||||    
T  20685052 ttttactttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 38225774 - 38225727
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  38225774 tttactttaggaatgaacgaaacaatttgaataatgagctgaattctt 38225727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 20686834 - 20686880
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||||||||||||| || |||||| |||| |||||||||||    
T  20686834 ttttactttaggaatgagcggaaacatttgaataacgagcagaattc 20686880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 12969296 - 12969340
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaatt 258  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||    
T  12969296 ttttacttt-ggaatgagcggaaccatttagataatgagcagaatt 12969340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 49 - 261
Target Start/End: Original strand, 2721 - 2933
Alignment:
Q  49 tgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgcta 148  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  2721 tgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtcatgcta 2820  T
Q  149 cctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataat 248  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||  |||||||||||||||||||| ||||    
T  2821 cctgtcttaagtcattttccaatttgcactagcgcatgttaagttgcataagggtaaaaaggtcttttattttgagaatgagcgaaaccatttgggtaat 2920  T
Q  249 gagcagaattctt 261  Q
    |||||||||||||    
T  2921 gagcagaattctt 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 2746 - 2815
Alignment:
Q  23 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    ||||||||||||||||||||| || ||| |||| |||||||||  | |||||||||||||||||||||||    
T  2746 actagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtca 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 1e-74; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 44430603 - 44430417
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  44430603 actagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtcgcgctacctgtcttaagtcacgttccaattt 44430504  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    |||||||||||||||||||||||||||||| ||| | | ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44430503 gcactagcgcatgttaagttgcgtaagggtaaaatgatcttttactttgggaatgagcaaaaccatttggataatgagcagaattct 44430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 13840617 - 13840730
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||     
T  13840617 actagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattg 13840716  T
Q  174 gcactagcgcatgt 187  Q
    |||||||| |||||    
T  13840717 gcactagcacatgt 13840730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 79 - 259
Target Start/End: Complemental strand, 3860445 - 3860246
Alignment:
Q  79 cgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacg-------------- 164  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||                  
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtcacgctacctgccttaagtcacgctacctgccttaag 3860346  T
Q  165 -----tttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
         ||||||||| ||||||||||| ||||||||||||||||| ||||  | ||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  3860345 tcacgtttcaatttacactagcgcatattaagttgcgtaagggtaaaaatatcttttattttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 127 - 242
Target Start/End: Original strand, 50664131 - 50664246
Alignment:
Q  127 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 226  Q
    |||| |||||||||| |||||||||||||||| ||||||  || |||||||||||||| |||||||||||||| ||| ||||||| ||||||||||| ||    
T  50664131 tagcatgacttaagttacgctacctgtcttaaatcacgtaccattttgcactagcgcaagttaagttgcgtaaaggtaaaaaggtcttttactttagaaa 50664230  T
Q  227 tgagcgaaaccatttg 242  Q
    ||||||||||||||||    
T  50664231 tgagcgaaaccatttg 50664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 39685378 - 39685212
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||                   |||||| ||||||    
T  39685378 actagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagt-------------------cacgttccaattt 39685298  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||||   ||||||||||||||||||| ||||||||| |||||    
T  39685297 gcactagcgcgtgttaagttgcgtaagggtaaaatggtcttttactttgaaaatgagcgaaaccatttgggtaatgagcaaaattc 39685212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 53814454 - 53814640
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    |||||||||  |||||||| |||||||||||||||||||||| ||| ||| |  || |||| ||||||||||  || | | |||||| |||||| |||||    
T  53814454 actagcgtggtttaagtcacgtaacgtgacttaagttgcgttccattttgtaccagtgtgagttaagtcacgtaacgtatgttaagttacgttttaattt 53814553  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    |||||||||||| ||||  |||||| |||      | |  |||||||| |||||||||||| |||||||| ||||||||||||||||    
T  53814554 gcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 13840613 - 13840686
Alignment:
Q  19 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    ||||||||||||||||||||||||| || |||| ||| ||| ||||| ||||||||||||||||||||||||||    
T  13840613 cagaactagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtca 13840686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 39685382 - 39685309
Alignment:
Q  19 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    ||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||| ||||||||||||||||    
T  39685382 cagaactagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagtca 39685309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 44430604 - 44430535
Alignment:
Q  22 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtc 91  Q
    |||||||||||||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||||    
T  44430604 aactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtc 44430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 13843595 - 13843670
Alignment:
Q  183 catgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaatt 258  Q
    ||||||||||||| ||||||| ||| | | ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13843595 catgttaagttgcttaagggtaaaatgatcttttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 3860445 - 3860381
Alignment:
Q  28 cgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    ||||||||||||| || || |||||||| ||| ||||| || |||||||||||||||||||||||    
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtca 3860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 15040726 - 15040678
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattcttt 262  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||    
T  15040726 tttactttgggaatgagcgaatccatttgggtaatgagcagaattcttt 15040678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 4969921 - 4969874
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  4969921 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattct 4969874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 21566895 - 21567029
Alignment:
Q  127 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaag-gtattttactttagga 225  Q
    |||||||||||||||||| |||| |  |||||| || ||  | ||||| ||||||| |||||||||  ||||||||| ||||| |||||| || || |||    
T  21566895 tagcgtgacttaagtcacactacgttacttaagccatgtagctatttgtactagcgtatgttaagtcacgtaagggtaaaaagagtattt-acattggga 21566993  T
Q  226 atgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||||  ||| ||||||| ||| |||||||||||||    
T  21566994 atgagaaaaatcatttgggtaaagagcagaattctt 21567029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 44836511 - 44836558
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||    
T  44836511 tttactttagaaatgagcggaaccatttagataatgagcagaattctt 44836558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 6162714 - 6162760
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||    
T  6162714 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 7665856 - 7665802
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 190  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  7665856 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 7665802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 16931491 - 16931441
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattctttgt 264  Q
    ||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  16931491 tttactttaggaacgagcgatactatttgaataatgagcagaattctttgt 16931441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 40517556 - 40517601
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  40517556 tttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 26998320 - 26998367
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||| ||||| ||||||||||||||||||||| | |||||||||||||    
T  26998320 tttattttagaaatgagcgaaaccatttggatgaagagcagaattctt 26998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 3860479 - 3860437
Alignment:
Q  13 cagagacagaactagcgtgacttaagtcaagcaaagtgactta 55  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||    
T  3860479 cagagacagaactagtgtgccttaagtcaagcaacgtgactta 3860437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 35069479 - 35069524
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||| ||||| |||| |||||| |||||||||||||||||    
T  35069479 tttactttagaaatgaacgaatccatttagataatgagcagaattc 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 35485288 - 35485243
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| |||||||||| ||  |||||||||||||||||||||    
T  35485288 tttactttaagaatgagcgatactgtttggataatgagcagaattc 35485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 23672 - 23487
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    |||||||||||||||||||| |||||||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  23672 actagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagtgacgctacctgtcttaagtcacgttccaattt 23573  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||    
T  23572 gcactagcgcatgttaagttgtgtaagggtaaaaaggtcttttactttgagaatgagcaaaaccatttgaataatgagcagaattc 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 23682 - 23605
Alignment:
Q  13 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagt 90  Q
    ||||||||||||||||||||||||||||||  || |||||||| ||||| ||||||||||||||||||||||||||||    
T  23682 cagagacagaactagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagt 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 49030418 - 49030232
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  49030418 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaggctacctgtcttaagtcacgttccaattt 49030319  T
Q  174 gcactagcgcatgttaagttgcgtaagg-gtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||| ||||||||||||||||| || |||| || ||||||||| |||||||||||||||||||  |||  |||||||||||    
T  49030318 gcactagcgcgtgttaagttgcgtaaggtgtaaaaatgtgttttactttgggaatgagcgaaaccatttaaatacagagcagaattc 49030232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 49030428 - 49030349
Alignment:
Q  13 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 92  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  49030428 cagagacataactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 49030349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 259
Target Start/End: Original strand, 28446449 - 28446608
Alignment:
Q  99 gtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgta 198  Q
    ||||||||||||||||| ||| ||| | |||||||| ||||||||||| || ||| |||||| |||||  || ||| |||||||||||||||  ||||||    
T  28446449 gtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgtgtgttaagttacgttgtaa-ttgtactagcgcatgttaacatgcgta 28446547  T
Q  199 agggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
     |||       ||  |||||||| |||||||||||| |||||||| ||||||||| |||||    
T  28446548 ggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11821206 ttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 39650241 - 39650196
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  39650241 tttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 33401531 - 33401407
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| ||||||      |||  ||||||||  |||||||||||     
T  33401531 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaat 33401432  T
Q  236 ccatttggataatgagcagaattct 260  Q
    |||||||  ||||||||| ||||||    
T  33401431 ccatttgactaatgagcaaaattct 33401407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 33617767 - 33617643
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| || |||      |||  ||||||||  |||||||||||     
T  33617767 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaat 33617668  T
Q  236 ccatttggataatgagcagaattct 260  Q
    |||||||| ||||||||| ||||||    
T  33617667 ccatttgggtaatgagcataattct 33617643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 49033763 - 49033809
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||||    
T  49033763 tttactttgggaatgagcggaaccatttgaataatgagcagaattct 49033809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 5119064 - 5119109
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  5119064 tttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 3792498 - 3792534
Alignment:
Q  225 aatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3792498 aatgagcgaaaccatttggataatgagcataattctt 3792534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 45688354 - 45688306
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||||||    
T  45688354 ttttactttgggaatgagcagaaccatttggataatgagcggaattctt 45688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 3792606 - 3792560
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| | |||||||||||| |||||| |||||||||||||||    
T  3792606 ttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 28476015 - 28476061
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  28476015 tttactttgagaatgagcggaaccatttgggtaatgagcagaattct 28476061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 45691080 - 45691126
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691080 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 45691222 - 45691268
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691222 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 45691364 - 45691410
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691364 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 5e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 25403890 - 25404009
Alignment:
Q  13 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 112  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25403890 cagagacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgc 25403989  T
Q  113 gtttcatattgcattagcgt 132  Q
     |||||||||||| ||||||    
T  25403990 atttcatattgcactagcgt 25404009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 25403900 - 25404057
Alignment:
Q  74 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||| | ||||||||||||||||| |  || || |||||||  | |||||  ||    
T  25403900 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcatatt 25403999  T
Q  174 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagc 231  Q
    ||||||||| |||||||||| ||||||||| ||||   || ||||||| |||||||||    
T  25404000 gcactagcgtatgttaagttacgtaagggtaaaaaaaaatattactttgggaatgagc 25404057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 17436456 - 17436621
Alignment:
Q  96 aacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgc 195  Q
    |||||||||||||||||||| ||| ||| | |||||||| ||||||||||| ||   |||||||| |||||  ||||||||||||||||||||||  ||     
T  17436456 aacgtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgcatcttaagttacgttgtaatttgcactagcgcatgttaacatgt 17436555  T
Q  196 gtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    ||| ||       |||  |||||||| |||| ||||||| |||||||| |||||||||||||||||    
T  17436556 gtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattctt 17436621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 24327076 - 24326944
Alignment:
Q  127 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 226  Q
    |||||||| ||||||||| |||  |||||||||||||||  || ||||||||| |||| |||||||   |||||||| |||| ||  |||| ||| ||||    
T  24327076 tagcgtgagttaagtcacactatttgtcttaagtcacgtagcattttgcactaacgcaagttaagtcaagtaagggtaaaaatgtcatttattttgggaa 24326977  T
Q  227 tgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||  ||||||  |||||||||||||||    
T  24326976 tgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 807202 - 807247
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||    
T  807202 tttactttaggaatgagcgaatctatttggataaagagcagaattc 807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 31522568 - 31522613
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||    
T  31522568 tttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 32275804 - 32275849
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||    
T  32275804 tttactttgggaatgagcggaaccatttggataatgagcataattc 32275849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 14153399 - 14153353
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 260  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||||||||    
T  14153399 tttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 36933168 - 36933300
Alignment:
Q  127 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 226  Q
    ||||||||||||||||| |||| |||||||||| | |||  ||||||||||||||||||||||||||||||||| || ||||||| |||||||||  |||    
T  36933168 tagcgtgacttaagtcatgctatctgtcttaagccgcgtaccaatttgcactagcgcatgttaagttgcgtaagagtaaaaaggtcttttactttgagaa 36933267  T
Q  227 tgagcgaaaccatttggataatgagcagaattc 259  Q
    | |||||||||||||| ||||||||||||||||    
T  36933268 taagcgaaaccatttgaataatgagcagaattc 36933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 28678009 - 28677885
Alignment:
Q  136 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 235  Q
    |||||||||||||| | | |||||| |||||  ||||| || ||||||||||||| || |||| ||||     |||  ||||||||||||||||||||      
T  28678009 ttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcgatt 28677910  T
Q  236 ccatttggataatgagcagaattct 260  Q
    |||||||||||||||||||||||||    
T  28677909 ccatttggataatgagcagaattct 28677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 6705929 - 6706107
Alignment:
Q  75 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 174  Q
    ||||||||  ||||||||   |||||| ||||||||||||  ||| ||| | |||||||| ||||||||||| || | | |||||  |||||  ||||||    
T  6705929 ctagcgtggtttaagtcacacaacgtggcttaagttgcgtaacattttgtactagcgtgagttaagtcacgcaacatatgttaagatacgttgtaatttg 6706028  T
Q  175 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagca 253  Q
    ||||||||||||||||  |||||| |||       ||  |||||||| | |||||||||| ||||||||||||||||||    
T  6706029 cactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 4845346 - 4845302
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaatt 258  Q
    |||||||||||||||||||| || ||||| |||||||||||||||    
T  4845346 tttactttaggaatgagcgatactatttgaataatgagcagaatt 4845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 1145186 - 1145139
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 261  Q
    |||||||| ||||||||||||||  ||||||||||||||| |||||||    
T  1145186 tttactttgggaatgagcgaaactgtttggataatgagcataattctt 1145139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 34016047 - 34016002
Alignment:
Q  214 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||    
T  34016047 tttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 396 - 446
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttg 263  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||||    
T  396 ttttactttgggaatgagcgaaaccatttgggtaaagagcataattctttg 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 1521 - 1475
Alignment:
Q  213 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 259  Q
    ||||||||||  |||||||| |||||||||| |||||||||||||||    
T  1521 ttttactttaaaaatgagcggaaccatttgggtaatgagcagaattc 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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