View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9071_low_6 (Length: 702)
Name: NF9071_low_6
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 2 - 679
Target Start/End: Original strand, 11148082 - 11148751
Alignment:
| Q |
2 |
aatggtctcacacatcaaccacgagccttttccaggcgccattcacgactcattgctccttcctcttctctaactacgtgcttagtttatgcacattctc |
101 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| | |||| ||| || ||||||| ||||| ||||||||| |
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| T |
11148082 |
aatgttctcacacatcaaccacaagccttttctaggagccattcacgactcattgtcccttctttttctataaataagtgcttattttatacacattctc |
11148181 |
T |
|
| Q |
102 |
actatcac------tttcactttcacaataaacaatgaactcccttcgtgctgtagcaatagctttgtgctgtattgtggttgtgcttggagggttaccc |
195 |
Q |
| |
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| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11148182 |
agtatcactttcactttcactttcacaacaaacaatgaactcccttcgtgctgtagcaatagctttgtgctgtattgtggttgtgcttggagggttaccc |
11148281 |
T |
|
| Q |
196 |
ttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattgttcgtgaagtcataagaagtgtttctaagaaag |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11148282 |
ttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattgttcgtgaagtcataagaagtgtttctaagaaag |
11148381 |
T |
|
| Q |
296 |
atcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgtatactctctagtttttgcatattcaatcattcactaac |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11148382 |
atcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgtata---------------atattcaatcattcactaac |
11148466 |
T |
|
| Q |
396 |
tacattttctattttgctcattgtgtatgacatgctataaattcttgacatcttagtatacctataatcttatagtagtatgatcttcccatttaagtag |
495 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11148467 |
tacatgttctattttgctcattgcgtatgacatgctataaattcttgaaatcttagtatacctataatcctatagtagtatgatcttcccatttaagtag |
11148566 |
T |
|
| Q |
496 |
aattagtacatagtaagatataatataaattagaacaagatcaaatatagcaaataaagaatatgtttagcatgtccttgtgctgcccctatatgttata |
595 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11148567 |
aattagtacatagtaagatataatataaactagaacaagatcaaatatagcaaataaagaatatgtttagcatgtccttatgctgcccctatatgttata |
11148666 |
T |
|
| Q |
596 |
caattcaaaaatgnnnnnnnnnnnnntta-attaattttgtgtcttaaacataacttgtgtttaagggcacaaattaacattcac |
679 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11148667 |
caatccaaaaatgaaaaaaaaaaaaaaaatcttaattttgtgtcttaaacataacttgtgtttaagggcacaaattaacattcac |
11148751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 129 - 362
Target Start/End: Original strand, 11144935 - 11145168
Alignment:
| Q |
129 |
aatgaactcccttcgtgctgtagcaatagctttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttt |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | |||||||| | || |||||| |||||| ||| |||| |||||||||||| ||||||||||| |
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|
| T |
11144935 |
aatgaactctcttcgtgctgtagcaatagctttgtgttttattgtggctttgtttggagtgttacctttcccttccaatgcacaacttaatccatccttt |
11145034 |
T |
|
| Q |
229 |
tacaggaacacttgtccaaatgttagttccattgttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttc |
328 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||| |||||||||||| |||||||| ||||||| |
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| T |
11145035 |
tatagcaaaacttgtccaaatgttagttccattgtccgggaagtcataagaaacgtttctaagacagatactcgtatgcttgcaagtcttgttaggcttc |
11145134 |
T |
|
| Q |
329 |
actttcatgactgttttgttcaagtatgtatact |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
11145135 |
acttccatgactgttttgttcaagtatgtatact |
11145168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 156 - 359
Target Start/End: Original strand, 11170867 - 11171070
Alignment:
| Q |
156 |
agctttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagt |
255 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| |||||||||| |||||| | |
|
|
| T |
11170867 |
agctttgtgctgtgtagtagttgtgcttggagggttacccttctcatcaaatgcacaacttgataattccttctatagggacacttgtcctaatgttcat |
11170966 |
T |
|
| Q |
256 |
tccattgttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtat |
355 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||||||| |||| |||| | | ||||||||||| ||||| || |||||||||||| |
|
|
| T |
11170967 |
tccattgttcgtgaagtactaagaaatgtttctaagacagatcctcgtatacttgctagtttgataaggcttcacttccatgattgctttgttcaagtaa |
11171066 |
T |
|
| Q |
356 |
gtat |
359 |
Q |
| |
|
|||| |
|
|
| T |
11171067 |
gtat |
11171070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 163 - 349
Target Start/End: Original strand, 11135652 - 11135838
Alignment:
| Q |
163 |
tgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattg |
262 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||| || ||| ||||||||||||| ||| ||||||| |
|
|
| T |
11135652 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccatta |
11135751 |
T |
|
| Q |
263 |
ttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttc |
349 |
Q |
| |
|
|||||||||||||||| | || ||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11135752 |
ttcgtgaagtcataaggaacgtctctaagactgatcctcgcatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
11135838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 173 - 348
Target Start/End: Original strand, 11154722 - 11154897
Alignment:
| Q |
173 |
tggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattgttcgtgaagt |
272 |
Q |
| |
|
|||||||||||||||| ||||||| || ||| ||||||||||| ||| | |||||||| || |||||||||| |||||||||||||||| | | || |
|
|
| T |
11154722 |
tggttgtgcttggaggactacccttttcctcagatgcacaacttagtcccactttttacagcaaaacttgtccaactgttagttccattgttagcaatgt |
11154821 |
T |
|
| Q |
273 |
cataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgtt |
348 |
Q |
| |
|
||| || ||||||||||| ||||| || ||||||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
11154822 |
attaacaaatgtttctaagacagatcaacgcatgcttgctagcctcgtcaggcttcactttcatgactgttttgtt |
11154897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 359
Target Start/End: Complemental strand, 11192481 - 11192278
Alignment:
| Q |
156 |
agctttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagt |
255 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || | | |||| ||||||||||| | | |
|
|
| T |
11192481 |
agctttgtgctgtgtagtggttgtgcttggagggtttcccttctcttcaaatgcacaacttgatcctaacttctataaggacacatgtccaaatgtcact |
11192382 |
T |
|
| Q |
256 |
tccattgttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtat |
355 |
Q |
| |
|
|||||||| | || || || |||||| ||| |||||||||||| |||| ||| | | |||||||| |||||||| |||||||||||||||| |
|
|
| T |
11192381 |
tccattgtccaaagtatcttagcaaacgtttctcagacagatcctcgtatccttgccagtttcattaggcttcattttcatgattgttttgttcaagtat |
11192282 |
T |
|
| Q |
356 |
gtat |
359 |
Q |
| |
|
|||| |
|
|
| T |
11192281 |
gtat |
11192278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 11109287 - 11109361
Alignment:
| Q |
156 |
agctttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatcctttta |
230 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11109287 |
agctttgtgctgtgtagtggttgtgtttggaggactacccttctcttcaaatgcacaacttgatccatactttta |
11109361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 360
Target Start/End: Complemental strand, 10794480 - 10794279
Alignment:
| Q |
159 |
tttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttcc |
258 |
Q |
| |
|
|||||| ||||||| |||||| |||||| |||||| || | |||||||||||| ||||||||| ||||||| || || |||||||||||| ||| |||| |
|
|
| T |
10794480 |
tttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttttatagcaaaacttgtccaaatcttaattcc |
10794381 |
T |
|
| Q |
259 |
attgttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgta |
358 |
Q |
| |
|
||||| || ||| || | || | || |||||| || || || |||| || | ||| ||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
10794380 |
attgtccgcgaaatcgttaggaactttactaagattgagccccgaatgcctgcgattctaatcaggcttcactttcatgattgtttcgttcaagtaagta |
10794281 |
T |
|
| Q |
359 |
ta |
360 |
Q |
| |
|
|| |
|
|
| T |
10794280 |
ta |
10794279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 11198285 - 11198345
Alignment:
| Q |
294 |
agatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagta |
354 |
Q |
| |
|
|||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
11198285 |
agatactcgtatttttgctagtcttgttaggcttcactttcatgattgttttgttcaagta |
11198345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 11176981 - 11177034
Alignment:
| Q |
304 |
atgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgt |
357 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
11176981 |
atgcttggtagtctcattaggctacattttcatgactgttttgttcaagtatgt |
11177034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 11117917 - 11117956
Alignment:
| Q |
322 |
aggcttcactttcatgactgttttgttcaagtatgtatac |
361 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11117917 |
aggcttcactttcatgattgtttcgttcaagtatgtatac |
11117956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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