View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9071_low_7 (Length: 654)
Name: NF9071_low_7
Description: NF9071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9071_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 78 - 580
Target Start/End: Original strand, 2976044 - 2976559
Alignment:
| Q |
78 |
gacgttgaatccaataccaactgtgacatctaacaaactcttctcatgttccatgagttaggaaaaacacatacatagatacatacataaactcaaacgc |
177 |
Q |
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| T |
2976044 |
gacgttgaatccaataccaactgtgacatctaacaaactcttctcatgttccatgagttaggaaaaacacatacata--------cacaaactcaaacgc |
2976135 |
T |
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| Q |
178 |
ttacgttg---------ttgttggtgttgtttcacaagaaaatttttccacctacttcaccgcaaattgcagttttttatagttaccatcatcaattcat |
268 |
Q |
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| T |
2976136 |
ttacgttgttgttgttgttgttggtgttgtttcacaagaaattttttccacctacttcaccgcaaattgcagttttttatagttaccatcatcaattcat |
2976235 |
T |
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| Q |
269 |
catcataaatttggcagtcagagtcacctaaatgacttcttcatttaagaccctcaacaaacaattccctcttctacctcctttccatcaccctcataaa |
368 |
Q |
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| T |
2976236 |
catcataaatttggcagtcagagtcacctaaatgacttcttcatttaagaccctcaacaaacaattccctcttctacctcctttccatcaccctcataaa |
2976335 |
T |
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| Q |
369 |
ttccctcatcacca------ttcttcttcttctattaattactcttacacccccatcttctcttcctctcaatttcgttcatcatcttgttcaagtaagt |
462 |
Q |
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| T |
2976336 |
tttcctcatcaccattcttcttcttcttcttctattaattactcttacacccccatcttctcttcctctcaatttcgttcatcatcttgctcaagtaagt |
2976435 |
T |
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| Q |
463 |
tttctctctcttgtttttgttacttacaatggaaatttcgttttgtacttatgttgattgagtgtgcatg------tctgtatctgtatctgtgccttgt |
556 |
Q |
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| T |
2976436 |
tttctctctcttgtttttgttacttacaatggaaatttcgttttgtacttttgttgattgagtgtgcatgtctgtatctgtatctgtatctgtgccttgt |
2976535 |
T |
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| Q |
557 |
cttgtcttgttttgttttattaac |
580 |
Q |
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| T |
2976536 |
cttgtcttgttttgttttattaac |
2976559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 2975968 - 2976013
Alignment:
| Q |
15 |
gacatcataattagtggtgcaaattgcatggcatggcatgttagac |
60 |
Q |
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| T |
2975968 |
gacattataattagtggtgcaaattgcatggcatggcatgttagac |
2976013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 640
Target Start/End: Original strand, 2976586 - 2976626
Alignment:
| Q |
600 |
gtcagtgagtttggctcatgtttttattgggggtggtgatt |
640 |
Q |
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| T |
2976586 |
gtcagtgattttggctcatgtttttattgggggtggtgatt |
2976626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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