View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_high_1 (Length: 791)
Name: NF9072_high_1
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 227 - 779
Target Start/End: Original strand, 35072061 - 35072626
Alignment:
| Q |
227 |
ttacagaatgttctttaaagttgtactattgaaaggnnnnnnnnt-gagtgcattactcaaagtggtgtgggatgatgggactcacttaagttaccttag |
325 |
Q |
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| T |
35072061 |
ttacaaaatgttctttaaagttgtactattgaaaggaaaaaaaaaagagtgcattactcaaagtggtgtgggatgatgggactcacttaagttaccttag |
35072160 |
T |
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| Q |
326 |
ccattaaggattgtaccattggagatgcttgtagcatacaactaaagaaactattttgctataaatggt---gaattgaagtcttttaattttcctgccg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35072161 |
ccattaaggattgtaccattggagatgcttgtagcatacaactaaagaaactattttgctataaatggtggtgaattgaagtcttttaattttcctgccg |
35072260 |
T |
|
| Q |
423 |
taatcaaaagacttctgcttaaatatttaagccaaaaaatttaatgacatattggatttaaatggaaataattgagaattccagctatctcagttttcag |
522 |
Q |
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| T |
35072261 |
tattcaaaagacttctgcttaaatatttaagccaaaaaatttaatgacatattggatttaaatggaaataattgagaattccagctatctcagttttcag |
35072360 |
T |
|
| Q |
523 |
ccgaccaattacaactttccactaaagacataaaaagcaacaatattgttgaaccagaaagcc---------nnnnnnnnnnnncaggccaatatgtcat |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
35072361 |
ccgaccaattacaactttccactaaagacataaaaagcaacaatattgttgaaccacaaagccaaaaaaataaaaaataaaaaacaggccaatatgtcat |
35072460 |
T |
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| Q |
614 |
agtgaacacaactactaggtttcttacccaaattgttatagcaaacatttttggtggtatttctgatttttgtttacgttgcaaattctatcctcaagct |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072461 |
agtgaacacaactactaggtttcttacccaaattgttatagcaaacatttttggtggtatttctgatttttgtttacgttgcaaattctatcctcaagct |
35072560 |
T |
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| Q |
714 |
aagcaagttgtcatgatgctttactttcctcatacgttcatcgtcattatcaatcactagtattat |
779 |
Q |
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| T |
35072561 |
aagcaagttgtcatgatgctttactttcctcatacgttcatcgtcattatcaatcacttgtattat |
35072626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 35070963 - 35071100
Alignment:
| Q |
1 |
agtcgataaataactagaggacgaatagagtcccttgggtgaagtagagcacaaaggtgactccgctaaggggatattggcgtgcatgaaatgacttcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
35070963 |
agtcgataaataactagaggacgaatagagtcccttgggtgcagtagagcacaaaggtgactccgctaaggggatattggtgtgcatgaaatgactctag |
35071062 |
T |
|
| Q |
101 |
tgttcaagtcggtgagagttttaggagagtctgaatgt |
138 |
Q |
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|||||||| | |||||||||||||||||||||||||| |
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| T |
35071063 |
tgttcaagccaatgagagttttaggagagtctgaatgt |
35071100 |
T |
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