View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_high_10 (Length: 463)
Name: NF9072_high_10
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 63 - 444
Target Start/End: Complemental strand, 33200345 - 33199963
Alignment:
| Q |
63 |
tagaaagtctttatttatagcgaaaaactcatctactgattatctcttttaagcaaaatgggactttaacacgtagaaatgataatgatatcatgttatg |
162 |
Q |
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| T |
33200345 |
tagaaagtctttatttatagcgaaaaactcatccactgattatctcttttaagcaaaatgggactttaacacgtagaaatgataataatatcatgttatg |
33200246 |
T |
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| Q |
163 |
gtcttgacgattgttagttaaatataaatgtgcatggtagcaaacaataacgacccttatcacattaatatgaagaaattgaaaagtaacaccccacgtc |
262 |
Q |
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| T |
33200245 |
gtcttgacgattgttagttaaatataaatgtgcatggtaacaaacaataacgacccttatcacattaatatgaagaaattgaaaagtaacaccccacgtc |
33200146 |
T |
|
| Q |
263 |
cccacatgcagcaagtgatggacattctggaaacttatccagaattagcatacgcatatattgaaaggcttacactttattacttgattgagacactgat |
362 |
Q |
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| T |
33200145 |
cccacatgcagcaagtgatggacattctggaaacttatccagaattagcatacgcatatattgaaaggcttacactttattacttgattgagacactgat |
33200046 |
T |
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| Q |
363 |
gccaacatggatccataacattagtgagc-tcaactaccacgggttgcataaaagcatatataattcagctcacacatatgtg |
444 |
Q |
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| T |
33200045 |
gccaacatggatccataacattagtgagcttcaactaccacgggttgcataaaagcatatataattcagctcacacatatgtg |
33199963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 33200426 - 33200377
Alignment:
| Q |
15 |
taatactaggaatctaaagtctttttattttctttgttgataaatatcta |
64 |
Q |
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| T |
33200426 |
taatactaggaatctaaagtctttttattttctttgttgataaatatcta |
33200377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 44770856 - 44770893
Alignment:
| Q |
205 |
aacaataacgacccttatcacattaatatgaagaaatt |
242 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
44770856 |
aacaataacgacacttatcacattaatatgaagaaatt |
44770893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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