View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_high_16 (Length: 421)

Name: NF9072_high_16
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_high_16
NF9072_high_16
[»] chr7 (20 HSPs)
chr7 (60-256)||(11806281-11806477)
chr7 (60-255)||(4122230-4122425)
chr7 (60-255)||(25519781-25519976)
chr7 (60-257)||(10902320-10902517)
chr7 (60-255)||(10267906-10268101)
chr7 (59-257)||(336850-337048)
chr7 (60-256)||(43311109-43311305)
chr7 (60-258)||(3523994-3524192)
chr7 (60-255)||(32592416-32592611)
chr7 (254-296)||(16917597-16917639)
chr7 (261-296)||(25737619-25737654)
chr7 (261-296)||(35923384-35923419)
chr7 (261-296)||(45486088-45486123)
chr7 (261-296)||(6191178-6191213)
chr7 (261-296)||(14806002-14806037)
chr7 (261-296)||(15252996-15253031)
chr7 (261-296)||(18102663-18102698)
chr7 (261-296)||(46760249-46760284)
chr7 (262-290)||(19492391-19492419)
chr7 (265-293)||(31549751-31549779)
[»] chr4 (27 HSPs)
chr4 (60-256)||(15056270-15056466)
chr4 (60-255)||(1084291-1084486)
chr4 (60-257)||(21398561-21398758)
chr4 (60-247)||(54072563-54072748)
chr4 (60-255)||(5927170-5927365)
chr4 (60-255)||(10489689-10489884)
chr4 (60-255)||(14678402-14678597)
chr4 (60-255)||(49545370-49545565)
chr4 (60-247)||(17194642-17194826)
chr4 (96-255)||(45117967-45118126)
chr4 (60-224)||(45108224-45108388)
chr4 (60-224)||(27181784-27181948)
chr4 (261-296)||(7654748-7654783)
chr4 (254-296)||(5483264-5483306)
chr4 (255-296)||(14332885-14332926)
chr4 (261-296)||(2229378-2229413)
chr4 (261-296)||(12002619-12002654)
chr4 (265-296)||(19351987-19352018)
chr4 (261-296)||(20281722-20281757)
chr4 (261-296)||(20716311-20716346)
chr4 (261-296)||(26916456-26916491)
chr4 (261-296)||(29203637-29203672)
chr4 (261-296)||(39078287-39078322)
chr4 (261-296)||(47868010-47868045)
chr4 (262-296)||(28668987-28669021)
chr4 (262-296)||(50080442-50080476)
chr4 (268-296)||(41414597-41414625)
[»] chr6 (10 HSPs)
chr6 (60-255)||(5309040-5309235)
chr6 (60-256)||(30702803-30702999)
chr6 (60-247)||(14220295-14220482)
chr6 (15-255)||(21351075-21351308)
chr6 (261-296)||(7274868-7274903)
chr6 (261-296)||(21542551-21542586)
chr6 (261-296)||(35129047-35129082)
chr6 (254-296)||(34177634-34177676)
chr6 (261-294)||(11082240-11082273)
chr6 (309-337)||(21542601-21542629)
[»] chr2 (23 HSPs)
chr2 (60-257)||(30111886-30112083)
chr2 (60-257)||(30123173-30123370)
chr2 (60-255)||(7355212-7355407)
chr2 (63-256)||(43379864-43380057)
chr2 (63-256)||(12534286-12534479)
chr2 (60-255)||(3536222-3536417)
chr2 (60-259)||(2273907-2274106)
chr2 (111-255)||(30877226-30877370)
chr2 (254-296)||(6765925-6765967)
chr2 (261-296)||(6110191-6110226)
chr2 (261-296)||(7645219-7645254)
chr2 (261-296)||(8701735-8701770)
chr2 (261-296)||(9864710-9864745)
chr2 (261-296)||(12938375-12938410)
chr2 (261-296)||(35023031-35023066)
chr2 (261-296)||(35517256-35517291)
chr2 (262-296)||(3201460-3201494)
chr2 (262-296)||(11825351-11825385)
chr2 (262-296)||(19264234-19264268)
chr2 (254-296)||(28858438-28858480)
chr2 (309-338)||(11617210-11617239)
chr2 (261-294)||(28599142-28599175)
chr2 (259-296)||(33677614-33677651)
[»] chr3 (23 HSPs)
chr3 (63-258)||(49529790-49529984)
chr3 (60-257)||(27644235-27644432)
chr3 (60-258)||(20395014-20395212)
chr3 (59-252)||(28392587-28392780)
chr3 (60-255)||(3863738-3863933)
chr3 (60-252)||(38516863-38517056)
chr3 (60-258)||(34946850-34947048)
chr3 (60-207)||(44552047-44552194)
chr3 (254-296)||(50650989-50651031)
chr3 (261-296)||(37042369-37042404)
chr3 (213-256)||(44552015-44552058)
chr3 (262-296)||(36546680-36546714)
chr3 (262-296)||(36561601-36561635)
chr3 (261-296)||(579097-579132)
chr3 (261-296)||(35963289-35963324)
chr3 (262-296)||(7866435-7866469)
chr3 (262-296)||(26208152-26208186)
chr3 (262-296)||(29235325-29235359)
chr3 (254-296)||(54464848-54464890)
chr3 (263-296)||(8769531-8769564)
chr3 (262-290)||(23311551-23311579)
chr3 (268-296)||(31837063-31837091)
chr3 (261-296)||(41476287-41476323)
[»] chr8 (20 HSPs)
chr8 (60-258)||(35217738-35217936)
chr8 (60-255)||(9312260-9312455)
chr8 (60-258)||(42990277-42990475)
chr8 (60-258)||(38224486-38224684)
chr8 (60-255)||(16726891-16727086)
chr8 (60-255)||(23715937-23716132)
chr8 (59-247)||(44501198-44501386)
chr8 (60-255)||(12773508-12773702)
chr8 (60-256)||(32740915-32741111)
chr8 (261-296)||(30575828-30575863)
chr8 (254-296)||(26483656-26483698)
chr8 (259-296)||(29920262-29920299)
chr8 (261-296)||(7022397-7022432)
chr8 (261-296)||(13143939-13143974)
chr8 (261-296)||(34890168-34890203)
chr8 (261-296)||(43216341-43216376)
chr8 (254-296)||(2052987-2053029)
chr8 (254-292)||(11158685-11158723)
chr8 (254-296)||(16358106-16358148)
chr8 (261-295)||(34900056-34900090)
[»] chr5 (17 HSPs)
chr5 (60-258)||(43489395-43489593)
chr5 (60-256)||(3616611-3616807)
chr5 (60-257)||(37827269-37827466)
chr5 (60-256)||(37037472-37037668)
chr5 (66-256)||(33336240-33336430)
chr5 (60-261)||(2027771-2027972)
chr5 (64-217)||(18003407-18003560)
chr5 (63-224)||(23416990-23417151)
chr5 (261-338)||(42273780-42273857)
chr5 (254-295)||(34425456-34425497)
chr5 (261-296)||(20039235-20039270)
chr5 (261-296)||(20644147-20644182)
chr5 (261-296)||(25840997-25841032)
chr5 (261-296)||(37562754-37562789)
chr5 (261-296)||(43589955-43589990)
chr5 (309-341)||(22527684-22527716)
chr5 (254-294)||(43454318-43454358)
[»] scaffold0129 (1 HSPs)
scaffold0129 (60-255)||(37768-37963)
[»] chr1 (24 HSPs)
chr1 (60-255)||(41775235-41775430)
chr1 (60-256)||(16640522-16640718)
chr1 (63-258)||(22146410-22146605)
chr1 (60-256)||(7391138-7391336)
chr1 (60-224)||(8363738-8363902)
chr1 (113-259)||(29650915-29651061)
chr1 (261-296)||(33369683-33369718)
chr1 (254-296)||(32983165-32983207)
chr1 (259-292)||(42965813-42965846)
chr1 (255-295)||(6304791-6304831)
chr1 (261-296)||(24190602-24190637)
chr1 (261-296)||(24728619-24728654)
chr1 (254-296)||(2126164-2126206)
chr1 (254-296)||(3875012-3875054)
chr1 (259-293)||(7467958-7467992)
chr1 (254-296)||(7875933-7875975)
chr1 (262-296)||(28016739-28016773)
chr1 (262-296)||(45226272-45226306)
chr1 (254-291)||(1820541-1820578)
chr1 (309-338)||(24190651-24190680)
chr1 (263-295)||(6785590-6785622)
chr1 (311-339)||(26061653-26061681)
chr1 (60-88)||(29650878-29650906)
chr1 (268-296)||(45840059-45840087)
[»] scaffold0300 (1 HSPs)
scaffold0300 (261-296)||(566-601)
[»] scaffold0045 (1 HSPs)
scaffold0045 (262-296)||(78091-78125)
[»] scaffold0172 (1 HSPs)
scaffold0172 (311-339)||(18452-18480)
[»] scaffold0018 (1 HSPs)
scaffold0018 (254-290)||(154986-155022)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 11806281 - 11806477
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  11806281 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatcttccgaaaaattattatcttattattttatcgagtttttc 11806380  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  11806381 aatttcttacattggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtat 11806477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 4122230 - 4122425
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  4122230 ttcagtttctatgaattattaatttatgattttcttgggaccaaaaattataaagggatctcccgaaaaattattatcttattattttatcgagtttttc 4122329  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||| ||||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  4122330 aatttcttacattggcccaagtcgggaccggataaatttattattttaaagagtttattaatttaccgagtattaatttaaagagtttctactgta 4122425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 25519781 - 25519976
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  25519781 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcaaattattc 25519880  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  25519881 aattttttacactggtccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 25519976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 10902320 - 10902517
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||| ||||||||||||       |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||  | || |||    
T  10902320 ttcagtttctatgaataattaatttatgattttcttgggaccgaaaattataaagggatcttccaaaaaattattatcttattattttatcgaattattc 10902419  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  10902420 aattttttacactgacccaagtcggaaccggacaaatttattattttatagagtttattaatttaccgagtattaatttaaagagtttctactgtata 10902517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 10268101 - 10267906
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  10268101 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 10268002  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  10268001 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttatcgagtattaatttaaagagtttctactgta 10267906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 59 - 257
Target Start/End: Original strand, 336850 - 337048
Alignment:
Q  59 cttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagttttt 158  Q
    ||||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || ||    
T  336850 cttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattatt 336949  T
Q  159 caattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    |||||||||||| | | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  336950 caattttttacactagcccaagtcgggatcggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 43311305 - 43311109
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  43311305 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 43311206  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||    
T  43311205 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttatcgaatattaatttaaagagtttctactgtat 43311109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 3523994 - 3524192
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  3523994 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 3524093  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| ||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  3524094 aattttttacactggcccaagtcggtatcttacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtatat 3524192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 32592416 - 32592611
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  32592416 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 32592515  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| |||| | |  | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  32592516 aattttttacactggcccaatttgtgatcgtacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 32592611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 16917597 - 16917639
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  16917597 tatatttcaaatttttatgttttaattttcttaataagtgtga 16917639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 25737654 - 25737619
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  25737654 caaatttttatgttttagttttcttaataagtgtga 25737619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 35923384 - 35923419
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  35923384 caaatttttatgttttagttttcttaataagtgtga 35923419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 45486088 - 45486123
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  45486088 caaatttttatgttttagttttcttaataagtgtga 45486123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 6191178 - 6191213
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  6191178 caaattcttatgttttagttttcttaataagtgtga 6191213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 14806002 - 14806037
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  14806002 caaattcttatgttttagttttcttaataagtgtga 14806037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 15252996 - 15253031
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  15252996 caaattcttatgttttagttttcttaataagtgtga 15253031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 18102663 - 18102698
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  18102663 caaattcttatgttttagttttcttaataagtgtga 18102698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 46760284 - 46760249
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  46760284 caaattcttatgttttagttttcttaataagtgtga 46760249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 19492419 - 19492391
Alignment:
Q  262 aaatttttatgttttagttttcttaataa 290  Q
    |||||||||||||||||||||||||||||    
T  19492419 aaatttttatgttttagttttcttaataa 19492391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 31549779 - 31549751
Alignment:
Q  265 tttttatgttttagttttcttaataagtg 293  Q
    |||||||||||||||||||||||||||||    
T  31549779 tttttatgttttagttttcttaataagtg 31549751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 15056270 - 15056466
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  | || |||    
T  15056270 ttcagtttctatgaattattaatttatgattttcttgggaccaaaaattataaagggatctcccgaaaaattattatcttattattttatcgaattattc 15056369  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  15056370 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtat 15056466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 1084486 - 1084291
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  1084486 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttactattttatcgaattattc 1084387  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  1084386 aattttttacactggcccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 1084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 21398561 - 21398758
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  21398561 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 21398660  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  21398661 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 21398758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 60 - 247
Target Start/End: Original strand, 54072563 - 54072748
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  54072563 ttcagtttctatgaattattaatttatgatttttttgggaccgaaaattataaagggatctcccgaaaaattattatcttattattttatcgagtttttc 54072662  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagttt 247  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  54072663 aattttttacattggcctaagtcggaaccgaacaaatttattatttt--agagtttattaatttaccgagtattaatttaaagagttt 54072748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 5927170 - 5927365
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  5927170 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 5927269  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  5927270 aattttttacactggcccaagtcgggatcgaacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 5927365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 10489689 - 10489884
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || ||     
T  10489689 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattt 10489788  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  10489789 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccaagtattaatttaaagagtttctactgta 10489884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 14678402 - 14678597
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  14678402 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 14678501  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  14678502 aattttttacactggcccaagtcgggagcgaacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 14678597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 49545565 - 49545370
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  49545565 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 49545466  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||  |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  49545465 aattttttacactgacccaaatcaggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 49545370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 60 - 247
Target Start/End: Complemental strand, 17194826 - 17194642
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| |||||||||   |||| ||||||||  | || |||    
T  17194826 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatcttccaaaaaattat---cttattattttatcgaattattc 17194730  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagttt 247  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17194729 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagttt 17194642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 96 - 255
Target Start/End: Original strand, 45117967 - 45118126
Alignment:
Q  96 gggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaattttttacattgggccaagtcggaaccggacaaa 195  Q
    |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||||||||||||| ||| | ||||||| ||||||||||    
T  45117967 gggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattcaattttttacactggcctaagtcgggaccggacaaa 45118066  T
Q  196 tttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  45118067 tttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 45118126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 45108224 - 45108388
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  45108224 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 45108323  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaattta 224  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45108324 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 45108388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 27181948 - 27181784
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || |||    
T  27181948 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaaggaatctcccaaaaaattattatcttattattttatcgaattattc 27181849  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaattta 224  Q
    ||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  27181848 aattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaattta 27181784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 7654748 - 7654783
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  7654748 caaatttttatgttttagttttcttaataagtgtga 7654783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 5483306 - 5483264
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  5483306 tatacttcaaatttttatgttttagttttcttaacaagtgtga 5483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 14332885 - 14332926
Alignment:
Q  255 atatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  14332885 atattccaaattcttatgttttagttttcttaataagtgtga 14332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 2229378 - 2229413
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  2229378 caaattcttatgttttagttttcttaataagtgtga 2229413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 12002654 - 12002619
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  12002654 caaattcttatgttttagttttcttaataagtgtga 12002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 296
Target Start/End: Original strand, 19351987 - 19352018
Alignment:
Q  265 tttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||    
T  19351987 tttttatgttttagttttcttaataagtgtga 19352018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 20281722 - 20281757
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  20281722 caaattcttatgttttagttttcttaataagtgtga 20281757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 20716311 - 20716346
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  20716311 caaattcttatgttttagttttcttaataagtgtga 20716346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 26916456 - 26916491
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  26916456 caaattcttatgttttagttttcttaataagtgtga 26916491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 29203637 - 29203672
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  29203637 caaattcttatgttttagttttcttaataagtgtga 29203672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 39078287 - 39078322
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  39078287 caaattcttatgttttagttttcttaataagtgtga 39078322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 47868010 - 47868045
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  47868010 caaattcttatgttttagttttcttaataagtgtga 47868045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 28669021 - 28668987
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  28669021 aaattcttatgttttagttttcttaataagtgtga 28668987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 50080476 - 50080442
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  50080476 aaattcttatgttttagttttcttaataagtgtga 50080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 41414625 - 41414597
Alignment:
Q  268 ttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||    
T  41414625 ttatgttttagttttcttaataagtgtga 41414597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 8e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 5309235 - 5309040
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  5309235 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatcttccgaaaaattattatcttattattttatcgagtttttc 5309136  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||| ||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  5309135 aatttcttacattggcctaaatcggaaccggacaaatttattattttagagaatttattaatttaccgagtattaatttaaagagtttctactgta 5309040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 30702999 - 30702803
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  30702999 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 30702900  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  30702899 aattttttacactggcccaagtcgggaccggacaaatttattattttaaagagtttattaatttatcgagtattaatttaaagagtttctactgtat 30702803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 60 - 247
Target Start/End: Original strand, 14220295 - 14220482
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  14220295 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctaccaaaaaattattatcttattattttatcgaattattc 14220394  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagttt 247  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  14220395 aattttttacactggcccaagacgggaccggacaaatttattattttaaagagtttattaatttaccgagtattaatttaaagagttt 14220482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 21351308 - 21351075
Alignment:
Q  15 agaggaacaaatgtgttcaatgtattcttaatattannnnnnnncttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaa- 113  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||       |||||| |||||||||||     
T  21351308 agaggaacaaatgtgttcaatgtattcttaatatt---ttttttcttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaat 21351212  T
Q  114 ----gggatcttccgaaaaattattatcttagtattttattcagtttttcaattttttacattgggccaagtcggaaccggacaaatttattattttaga 209  Q
        ||||||| ||||| ||||||||||||| ||         |||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||    
T  21351211 caaagggatctcccgaataattattatcttatta---------gtttttcaattttttacattggcccaagtcgggatcagacaaatttattattttaga 21351121  T
Q  210 gagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  21351120 gagtttattaatttaccgagtattaaattaaagagtttctactgta 21351075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 7274903 - 7274868
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  7274903 caaattcttatgttttagttttcttaataagtgtga 7274868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 21542551 - 21542586
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  21542551 caaattcttatgttttagttttcttaataagtgtga 21542586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 35129082 - 35129047
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  35129082 caaattcttatgttttagttttcttaataagtgtga 35129047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 34177676 - 34177634
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  34177676 tatattccaaattcttatgttttaattttcttaataagtgtga 34177634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 11082273 - 11082240
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgt 294  Q
    |||||| |||||||||||||||||||||||||||    
T  11082273 caaattcttatgttttagttttcttaataagtgt 11082240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 21542601 - 21542629
Alignment:
Q  309 cttataatttgggacggagggagtatata 337  Q
    |||||||||||||||||||||||||||||    
T  21542601 cttataatttgggacggagggagtatata 21542629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 30112083 - 30111886
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  |||| |||    
T  30112083 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgagttattc 30111984  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  30111983 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 30111886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 30123370 - 30123173
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  |||| |||    
T  30123370 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgagttattc 30123271  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  30123270 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 30123173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 7355407 - 7355212
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || |||    
T  7355407 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaaggaatctcccaaaaaattattatcttattattttatcgaattattc 7355308  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  7355307 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 7355212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 43380057 - 43379864
Alignment:
Q  63 agtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaat 162  Q
    ||||||||||||||||||||||||||       |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||  |||||||||||    
T  43380057 agtttctatgaattattaatttatgattttcttgggaccgaaaattataaaaggatctcccgaaaaattattatcttattattttatcaagtttttcaat 43379958  T
Q  163 tttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    || ||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  43379957 ttcttaaattggcccaagtcgggatcggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctcctgtat 43379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 63 - 256
Target Start/End: Original strand, 12534286 - 12534479
Alignment:
Q  63 agtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaat 162  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || ||||||    
T  12534286 agtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattcaat 12534385  T
Q  163 tttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    |||||||| ||| |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  12534386 tttttacactggcccaagttgagaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtat 12534479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 3536222 - 3536417
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       || ||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || ||     
T  3536222 ttcagtttctatgaattattaatttatgattttcttggaaccgaaaattataaaggaatctcccaaaaaattattatcttattattttatcgaattattt 3536321  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  3536322 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 3536417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 2273907 - 2274106
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| |  |||||||||||||||| ||||||||  | ||  ||    
T  2273907 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcctaaaaaattattatcttattattttatcgaattactc 2274006  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatatt 259  Q
    ||||||||||| ||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  2274007 aattttttacactgactcaagtcggaaccggacaaatttattattttaaagagtttattaatttaccgagtattaatttaaagaatttctactgtatatt 2274106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 30877370 - 30877226
Alignment:
Q  111 aaagggatcttccgaaaaattattatcttagtattttattcagtttttcaattttttacattgggccaagtcggaaccggacaaatttattattttagag 210  Q
    |||||||||| || |||||||||||||||| ||||||||  | || |||||||||||||| ||| |||||| || |||||||||||||||||||||||||    
T  30877370 aaagggatctcccaaaaaattattatcttattattttatcgaattattcaattttttacactggcccaagttgggaccggacaaatttattattttagag 30877271  T
Q  211 agtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  30877270 agtttattaatttaccgagtattaatttaaagagtttctactgta 30877226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 6765967 - 6765925
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  6765967 tatacttcaaatttttatgttttaattttcttaataagtgtga 6765925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 6110226 - 6110191
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  6110226 caaattcttatgttttagttttcttaataagtgtga 6110191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 7645254 - 7645219
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  7645254 caaattcttatgttttagttttcttaataagtgtga 7645219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 8701735 - 8701770
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8701735 caaatttttatgttttagttttcttaataagcgtga 8701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 9864745 - 9864710
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  9864745 caaattcttatgttttagttttcttaataagtgtga 9864710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 12938375 - 12938410
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  12938375 caaattcttatgttttagttttcttaataagtgtga 12938410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 35023031 - 35023066
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  35023031 caaattcttatgttttagttttcttaataagtgtga 35023066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 35517256 - 35517291
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  35517256 caaattcttatgttttagttttcttaataagtgtga 35517291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 3201460 - 3201494
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  3201460 aaattcttatgttttagttttcttaataagtgtga 3201494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 11825385 - 11825351
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  11825385 aaattcttatgttttagttttcttaataagtgtga 11825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 19264234 - 19264268
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  19264234 aaattcttatgttttagttttcttaataagtgtga 19264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 28858438 - 28858480
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||    
T  28858438 tatattttaaattcttatgttttagttttcttaatatgtgtga 28858480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 11617210 - 11617239
Alignment:
Q  309 cttataatttgggacggagggagtatatat 338  Q
    ||||||||||||||||||||||||||||||    
T  11617210 cttataatttgggacggagggagtatatat 11617239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 28599175 - 28599142
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgt 294  Q
    |||||| |||||||||||||||||||||||||||    
T  28599175 caaattcttatgttttagttttcttaataagtgt 28599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 33677614 - 33677651
Alignment:
Q  259 ttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  33677614 ttcaaatttttatgttttagttttcgtaataagcgtga 33677651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 63 - 258
Target Start/End: Original strand, 49529790 - 49529984
Alignment:
Q  63 agtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaat 162  Q
    ||||||||||||||||||||||||||       |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||| ||||    
T  49529790 agtttctatgaattattaatttatgattttcttgggatcaaaaattataaagggatctcccgaaaaattattatcttattattttatcgagtttt-caat 49529888  T
Q  163 tttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  49529889 tttttacattggcccaagtcgggacctgacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtatat 49529984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 27644432 - 27644235
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  27644432 ttcagtttctatgaattattaatttatgatttttttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 27644333  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  27644332 aattttttacactggtccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 27644235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 20395014 - 20395212
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||  | || |||    
T  20395014 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatcttccaaaaaattattatcttattattttatcgaattattc 20395113  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  20395114 aattttttacactggcccaagtcgggaccggacaaattcattattttagagagtttattaatttaccgaggattaatttaaagagtttctactgtatat 20395212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 28392780 - 28392587
Alignment:
Q  59 cttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagttttt 158  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||  |||||||||||||||||| ||||| ||| | |||||    
T  28392780 cttcagtttctatgaattattaatttatgattttattgggaccaaaaattataaagggatctctcgaaaaattattatcttattatttcattgaattttt 28392681  T
Q  159 caattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatact 252  Q
    ||||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  28392680 caattttttacattggcttaagtcgggaccggataaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctact 28392587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 3863738 - 3863933
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||||||||  | |||||||||||||||| ||||||||  | || |||    
T  3863738 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctctcaaaaaattattatcttattattttatcgaattattc 3863837  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  3863838 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 3863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 60 - 252
Target Start/End: Complemental strand, 38517056 - 38516863
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  38517056 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 38516957  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttacc-gagtattaaattaaagagtttatact 252  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  38516956 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttacctgagtattaatttaaagagtttctact 38516863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 34946850 - 34947048
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||| | |||||||||||||||||| || |||||||||||||||| ||||||||  | || | |    
T  34946850 ttcagtttctatgaattattaatttatgattttcatgggatcgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattatcc 34946949  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| |||||| || | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  34946950 aattttttacactggcccaagttgggatcggataaatttattattttagagagtttattaatttaccgagtattaatttaaagaatttctactgtatat 34947048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 44552194 - 44552047
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||| ||||||||||||||||       |||||| |||||||||||||| ||| || |||||||||||||||| ||||||||  | || |||    
T  44552194 ttcagtttctataaattattaatttatgattttcttgggaccgaaaattataaagggttctcccaaaaaattattatcttattattttatcgaattattc 44552095  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattatttta 207  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||| ||||    
T  44552094 aattttttacactggcccaagtcgggaccggacaaatttattaattta 44552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 50651031 - 50650989
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  50651031 tatatttcaaattcttatgttttagttttcttaataagtgtga 50650989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 37042404 - 37042369
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  37042404 caaatttttatgttttagttttcttaataagtgtga 37042369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 44552058 - 44552015
Alignment:
Q  213 tttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  44552058 tttattaatttaccgagtattaatttaaagagtttctactgtat 44552015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 36546680 - 36546714
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||||||||    
T  36546680 aaatttttatgttttagttttcttaataagtgtga 36546714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 36561635 - 36561601
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||||||||    
T  36561635 aaatttttatgttttagttttcttaataagtgtga 36561601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 579132 - 579097
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  579132 caaattcttatgttttagttttcttaataagtgtga 579097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 35963289 - 35963324
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  35963289 caaattcttatgttttagttttcttaataagtgtga 35963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 7866469 - 7866435
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  7866469 aaattcttatgttttagttttcttaataagtgtga 7866435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 26208152 - 26208186
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  26208152 aaattcttatgttttagttttcttaataagtgtga 26208186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 29235325 - 29235359
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  29235325 aaattcttatgttttagttttcttaataagtgtga 29235359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 54464890 - 54464848
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| |||||||| ||||||||||||||||||||||| |||||    
T  54464890 tatacttcaaattcttatgttttagttttcttaataaatgtga 54464848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 8769564 - 8769531
Alignment:
Q  263 aatttttatgttttagttttcttaataagtgtga 296  Q
    |||| |||||||||||||||||||||||||||||    
T  8769564 aattgttatgttttagttttcttaataagtgtga 8769531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 23311579 - 23311551
Alignment:
Q  262 aaatttttatgttttagttttcttaataa 290  Q
    |||||||||||||||||||||||||||||    
T  23311579 aaatttttatgttttagttttcttaataa 23311551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 31837063 - 31837091
Alignment:
Q  268 ttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||    
T  31837063 ttatgttttagttttcttaataagtgtga 31837091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 41476323 - 41476287
Alignment:
Q  261 caaatttttatgtttt-agttttcttaataagtgtga 296  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41476323 caaatttttatgtttttagttttcttaataagtgtga 41476287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 35217738 - 35217936
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  35217738 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 35217837  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  35217838 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtatat 35217936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 9312455 - 9312260
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  9312455 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 9312356  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  9312355 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 9312260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 42990277 - 42990475
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  42990277 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 42990376  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  42990377 aattttttacactagcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtatat 42990475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 38224486 - 38224684
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  38224486 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 38224585  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  38224586 aattttttacactggcctaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagattttctactgtatat 38224684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 16727086 - 16726891
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || |||    
T  16727086 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaaggaatctcccaaaaaattattatcttattattttatcgaattattc 16726987  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  16726986 aattttttacactggcccaagtcgggaccggacaaatttattattttagaaagtttattaatttaccgagtattaatttaaagagtttctactgta 16726891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 23716132 - 23715937
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||| ||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  23716132 ttcagtttctatgaattactaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 23716033  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  23716032 aattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 23715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 59 - 247
Target Start/End: Complemental strand, 44501386 - 44501198
Alignment:
Q  59 cttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagttttt 158  Q
    ||||||||||||||||||||||||||||||       |||||| |||||||||||||||||| |  |||||||||||||||| ||||||||  | || ||    
T  44501386 cttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcctaaaaaattattatcttattattttatcgaattatt 44501287  T
Q  159 caattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagttt 247  Q
    |||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44501286 caattttttacactggcccaaatcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagttt 44501198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 12773508 - 12773702
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || |||    
T  12773508 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaaggaatctccc-aaaaattattatcttattattttatcgaattattc 12773606  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  12773607 aattttttacactggcccaaatcggaaccggacaaatttattattttagagagtttattaatttatcgagtattaatttaaagagtttctactgta 12773702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 32741111 - 32740915
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||| ||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  32741111 ttcagtttttatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 32741012  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| |||  |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  32741011 aattttttacactggctcaagtcgggaccggacaaatttattattttaaagagtttattaatttatcgagtattaatttaaagagtttctactgtat 32740915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 30575863 - 30575828
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  30575863 caaatttttatgttttagttttcttaataagtgtga 30575828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 26483656 - 26483698
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  26483656 tatacttcaaattcttatgttttagttttcttaataagtgtga 26483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 29920299 - 29920262
Alignment:
Q  259 ttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29920299 ttcaaattcttatgttttagttttcttaataagtgtga 29920262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 7022432 - 7022397
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||| |||||    
T  7022432 caaatttttatgttttagttttcttaataaatgtga 7022397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 13143974 - 13143939
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  13143974 caaattcttatgttttagttttcttaataagtgtga 13143939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 34890203 - 34890168
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  34890203 caaattcttatgttttagttttcttaataagtgtga 34890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 43216376 - 43216341
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  43216376 caaattcttatgttttagttttcttaataagtgtga 43216341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 2052987 - 2053029
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||| |||| |||||||||||||||||||||||||||||    
T  2052987 tatacttctaattattatgttttagttttcttaataagtgtga 2053029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 11158685 - 11158723
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagt 292  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  11158685 tatattccaaattcttatgttttagttttcttaataagt 11158723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 16358148 - 16358106
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||    
T  16358148 tatacttcaaatttttatattttaattttcttaataagtgtga 16358106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 34900056 - 34900090
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtg 295  Q
    |||||| ||||||||||||||||||||||||||||    
T  34900056 caaattattatgttttagttttcttaataagtgtg 34900090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 60 - 258
Target Start/End: Original strand, 43489395 - 43489593
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  43489395 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 43489494  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  43489495 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtatat 43489593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 3616611 - 3616807
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  3616611 ttcagtttctatgaattattaatttatgatttccttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 3616710  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  3616711 aattttttacactgacccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaattttaagagtttctactgtat 3616807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 60 - 257
Target Start/End: Complemental strand, 37827466 - 37827269
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||  |||||||||||| ||||| || |||||||||||||||| ||||||||  | || |||    
T  37827466 ttcagtttctatgaattattaatttatgattttcttgggactgaaaattataaagagatctcccaaaaaattattatcttattattttatcgaattattc 37827367  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtata 257  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  37827366 aattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtata 37827269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 37037668 - 37037472
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  37037668 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 37037569  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  37037568 aattttttacactggcccaagtcgggatcgaacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtat 37037472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 66 - 256
Target Start/End: Original strand, 33336240 - 33336430
Alignment:
Q  66 ttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaatttt 165  Q
    |||||||||||||||| ||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  ||||||||||||||    
T  33336240 ttctatgaattattaaattatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgagtttttcaatttt 33336339  T
Q  166 ttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  33336340 ttacattggtccaagtcgggaccggacaaatttattattttaaagaatttattaatttatcgagtattaatttaaagagtttctactgtat 33336430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 60 - 261
Target Start/End: Original strand, 2027771 - 2027972
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  2027771 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 2027870  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatatt 259  Q
    ||||||||||| |||  |||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||| |||    
T  2027871 aattttttacactggctcaagtcgggaccggacaaatttattattttagagaatttattaatttatcgagtattaatttaaagagtttctactgtacatt 2027970  T
Q  260 tc 261  Q
    ||    
T  2027971 tc 2027972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 18003560 - 18003407
Alignment:
Q  64 gtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaatt 163  Q
    |||||||||||||||||||||||||       |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  18003560 gtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccgaaaaattattatcttattattttatcgagtttttcaatt 18003461  T
Q  164 ttttacattgggccaagtcggaaccggacaaatttattattttagagagtttat 217  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  18003460 ttttacattggctcaaatcggaaccggacaaatttattattttagagagtttat 18003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 23416990 - 23417151
Alignment:
Q  63 agtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaat 162  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || ||||||    
T  23416990 agtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcaaattattcaat 23417089  T
Q  163 tttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaattta 224  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23417090 tttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 23417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 42273780 - 42273857
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtgannnnnnnnnncccttataatttgggacggagggagtatatat 338  Q
    |||||| |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  42273780 caaattcttatgttttagttttcttaataagtgtgatttttttttttgcttataatttgggacggagggagtatatat 42273857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 34425456 - 34425497
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtg 295  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  34425456 tatacttcaaattcttatgttttagttttcttaataagtgtg 34425497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 20039235 - 20039270
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  20039235 caaattcttatgttttagttttcttaataagtgtga 20039270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 20644147 - 20644182
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  20644147 caaattcttatgttttagttttcttaataagtgtga 20644182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 25840997 - 25841032
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||| |||||||||||||||||||||||    
T  25840997 caaatttttatgctttagttttcttaataagtgtga 25841032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 37562789 - 37562754
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  37562789 caaattcttatgttttagttttcttaataagtgtga 37562754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 43589990 - 43589955
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  43589990 caaattcttatgttttagttttcttaataagtgtga 43589955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 22527716 - 22527684
Alignment:
Q  309 cttataatttgggacggagggagtatatattat 341  Q
    ||||||||| |||||||||||||||||||||||    
T  22527716 cttataattagggacggagggagtatatattat 22527684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 43454358 - 43454318
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgt 294  Q
    |||||||||| || |||||||||| ||||||||||||||||    
T  43454358 tatatttcaagttcttatgttttaattttcttaataagtgt 43454318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 37963 - 37768
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  37963 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 37864  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    || |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  37863 aactttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 37768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 41775235 - 41775430
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  41775235 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 41775334  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgta 255  Q
    ||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  41775335 aattttttacactagcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgta 41775430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 16640718 - 16640522
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || |||    
T  16640718 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattc 16640619  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  16640618 aattttttacactggcccaagtcgggaccagacaaatttattattttagagagtttattaatttactgagtattaatttaaagagtttctactgtat 16640522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 63 - 258
Target Start/End: Complemental strand, 22146605 - 22146410
Alignment:
Q  63 agtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttcaat 162  Q
    ||||||||||||||||||||||||||       |||||| |||||||||||||||||| || |||||||||||||||| ||||||||  | || ||||||    
T  22146605 agtttctatgaattattaatttatgattttcttgggaccgaaaattataaagggatctcccaaaaaattattatcttattattttatcgaattattcaat 22146506  T
Q  163 tttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtatat 258  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||    
T  22146505 tttttacactggcctaagtcggaaccggacaaatttattattttagagagtttattaattcatcgagtattaatttaaagagtttctactgtatat 22146410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 7391138 - 7391336
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggacca-aaaattataaagggatcttccgaaaa-attattatcttagtattttattcagtttt 157  Q
    |||||||||||||||||||||||||||||       ||||||  |||||||||||||||||| || |||| |||||||||||| ||||||||  | || |    
T  7391138 ttcagtttctatgaattattaatttatgattttcttgggacccgaaaattataaagggatctccccaaaaaattattatcttattattttatcgaattat 7391237  T
Q  158 tcaattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttatactgtat 256  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  7391238 tcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttctactgtat 7391336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 8363738 - 8363902
Alignment:
Q  60 ttcagtttctatgaattattaatttatgannnnnnngggaccaaaaattataaagggatcttccgaaaaattattatcttagtattttattcagtttttc 159  Q
    |||||||||||||||||||||||||||||       |||||| ||||||||||||| |||| || |||||||||||||||| ||||||||  | || |||    
T  8363738 ttcagtttctatgaattattaatttatgattttcttgggaccgaaaattataaaggaatctcccaaaaaattattatcttattattttatcgaattattc 8363837  T
Q  160 aattttttacattgggccaagtcggaaccggacaaatttattattttagagagtttattaattta 224  Q
    ||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  8363838 aattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaattta 8363902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 29650915 - 29651061
Alignment:
Q  113 agggatcttccgaaaaattattatcttagtattttattcagtttttcaattttttacattgggccaagtcggaaccggacaaatttattattttagagag 212  Q
    |||||||| || |||||||||||||||| ||||||||  | || |||||||||||||| | | | ||||||| | || ||||||||||||||||||||||    
T  29650915 agggatctcccaaaaaattattatcttattattttatcgaattattcaattttttacactagccaaagtcgggaacgaacaaatttattattttagagag 29651014  T
Q  213 tttattaatttaccgagtattaaattaaagagtttatactgtatatt 259  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  29651015 tttattaatttaccgagtattaatttaaaaagtttctactgtatatt 29651061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 33369683 - 33369718
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||||||||||||||||||||||||||||||||||    
T  33369683 caaatttttatgttttagttttcttaataagtgtga 33369718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 32983207 - 32983165
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  32983207 tatacttccaatttttatgttttagttttcttaataagtgtga 32983165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 42965846 - 42965813
Alignment:
Q  259 ttcaaatttttatgttttagttttcttaataagt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  42965846 ttcaaatttttatgttttagttttcttaataagt 42965813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 6304831 - 6304791
Alignment:
Q  255 atatttcaaatttttatgttttagttttcttaataagtgtg 295  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  6304831 atattacaaattattatgttttagttttcttaataagtgtg 6304791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Original strand, 24190602 - 24190637
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  24190602 caaattcttatgttttagttttcttaataagtgtga 24190637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 24728654 - 24728619
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  24728654 caaattcttatgttttagttttcttaataagtgtga 24728619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 2126164 - 2126206
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||| ||||||||||||||||||||||| |||||    
T  2126164 tatattccaaattcttatgttttagttttcttaataaatgtga 2126206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 3875054 - 3875012
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| |||||||| |||||||||| ||||||||||||||||||    
T  3875054 tatacttcaaattcttatgttttacttttcttaataagtgtga 3875012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 7467992 - 7467958
Alignment:
Q  259 ttcaaatttttatgttttagttttcttaataagtg 293  Q
    |||||||| ||||||||||||||||||||||||||    
T  7467992 ttcaaattcttatgttttagttttcttaataagtg 7467958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 7875975 - 7875933
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataagtgtga 296  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||    
T  7875975 tataattcaaatttttatattttaattttcttaataagtgtga 7875933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 28016773 - 28016739
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  28016773 aaattcttatgttttagttttcttaataagtgtga 28016739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 45226272 - 45226306
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  45226272 aaattattatgttttagttttcttaataagtgtga 45226306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 1820541 - 1820578
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataag 291  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  1820541 tatattccaaattcttatgttttagttttcttaataag 1820578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 24190651 - 24190680
Alignment:
Q  309 cttataatttgggacggagggagtatatat 338  Q
    ||||||||||||||||||||||||||||||    
T  24190651 cttataatttgggacggagggagtatatat 24190680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 6785590 - 6785622
Alignment:
Q  263 aatttttatgttttagttttcttaataagtgtg 295  Q
    |||| ||||||||||||||||||||||||||||    
T  6785590 aattcttatgttttagttttcttaataagtgtg 6785622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 339
Target Start/End: Complemental strand, 26061681 - 26061653
Alignment:
Q  311 tataatttgggacggagggagtatatatt 339  Q
    |||||||||||||||||||||||||||||    
T  26061681 tataatttgggacggagggagtatatatt 26061653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 29650878 - 29650906
Alignment:
Q  60 ttcagtttctatgaattattaatttatga 88  Q
    |||||||||||||||||||||||||||||    
T  29650878 ttcagtttctatgaattattaatttatga 29650906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 45840087 - 45840059
Alignment:
Q  268 ttatgttttagttttcttaataagtgtga 296  Q
    |||||||||||||||||||||||||||||    
T  45840087 ttatgttttagttttcttaataagtgtga 45840059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 601 - 566
Alignment:
Q  261 caaatttttatgttttagttttcttaataagtgtga 296  Q
    |||||| |||||||||||||||||||||||||||||    
T  601 caaattcttatgttttagttttcttaataagtgtga 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 78091 - 78125
Alignment:
Q  262 aaatttttatgttttagttttcttaataagtgtga 296  Q
    ||||| |||||||||||||||||||||||||||||    
T  78091 aaattcttatgttttagttttcttaataagtgtga 78125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 339
Target Start/End: Original strand, 18452 - 18480
Alignment:
Q  311 tataatttgggacggagggagtatatatt 339  Q
    |||||||||||||||||||||||||||||    
T  18452 tataatttgggacggagggagtatatatt 18480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 154986 - 155022
Alignment:
Q  254 tatatttcaaatttttatgttttagttttcttaataa 290  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  154986 tatatttcagattcttatgttttagttttcttaataa 155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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