View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_high_3 (Length: 598)
Name: NF9072_high_3
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Complemental strand, 52274253 - 52273686
Alignment:
| Q |
15 |
cagagacccgtatacctagctaaattaacatgtgcaaaattaaattaaattgnnnnnnnnnn------tggcgttaaaataaaagcaatttcnnnnnnnn |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52274253 |
cagagacccgtatacctagctaaattaacatgtgcaaaattaaattaaattaaattgaaaaaaaaaaatggcgttaaaataaaagcaatttctttttttt |
52274154 |
T |
|
| Q |
109 |
nnnnnngtatggcgcgttt--atagaattttcaaacaaatttaccgccatttatttaggttaggtttggactagaaccatttcacgatccgttttaattc |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52274153 |
------gtatggcgcgtttttatagaattttcaaacaaatttaccgccatttatttaggttaggtttagactagaaccatttcacgatccgttttaattc |
52274060 |
T |
|
| Q |
207 |
gacaaggttaaagcctttgtttccaaaaccaaaaagtgtcgttcagatctcagaatcaaacatggatagcgacgaagatttcgaagccttaccttcttct |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52274059 |
gataaggttaaagcctttgtttccaaaaccaaaaagtgtcgttcagatctcagaatcaaacatggatagcgacgaagatttcgaagccttaccttcttct |
52273960 |
T |
|
| Q |
307 |
cccgtcatcgaacgaaagcttaagcgtttgaagaaggcatctagggtttcagaaaatcctcttcccttttcgtccccaatcaaattctctggatccgaac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52273959 |
cccgtcatcgaacgaaagcttaagcgtttgaagaaggcatctagggtttcagaaaatcctctccccttttcgtccccaatcaaattctctggatccgaac |
52273860 |
T |
|
| Q |
407 |
agaattctggcttggaggtgtcaattagaggatctgtccctgaagttgaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttggg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273859 |
agaattctggcttggaggtgtcaattagaggatctgtccctgaagttgaaagcttgggtggtgaaaatgttactgacacagttgaggaaaacgatttggg |
52273760 |
T |
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| Q |
507 |
tgcgaagagggttttggagtttgaatctatggacgatgaacttgacgccagggttccagagaagacaatagaag |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52273759 |
tgcgaagagggttttggagtttgaatctatggacgatgaacttgacgccagggttccagagaagacaatagaag |
52273686 |
T |
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