View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_high_9 (Length: 472)

Name: NF9072_high_9
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_high_9
NF9072_high_9
[»] chr1 (11 HSPs)
chr1 (1-456)||(44438633-44439090)
chr1 (1-62)||(21090103-21090164)
chr1 (1-59)||(30054525-30054583)
chr1 (1-62)||(4573367-4573428)
chr1 (1-56)||(30370143-30370198)
chr1 (4-62)||(15034443-15034501)
chr1 (1-58)||(20014450-20014507)
chr1 (1-58)||(30850923-30850980)
chr1 (1-62)||(45323994-45324055)
chr1 (1-38)||(12025193-12025230)
chr1 (5-62)||(33763341-33763398)
[»] chr7 (13 HSPs)
chr7 (1-62)||(35109679-35109740)
chr7 (1-62)||(21577181-21577242)
chr7 (1-62)||(38405237-38405298)
chr7 (1-56)||(12472115-12472170)
chr7 (1-62)||(11216757-11216818)
chr7 (1-62)||(16059436-16059497)
chr7 (1-62)||(38265320-38265381)
chr7 (1-62)||(41151160-41151221)
chr7 (1-62)||(18117027-18117088)
chr7 (1-62)||(34721822-34721883)
chr7 (1-58)||(48176391-48176448)
chr7 (1-61)||(45278441-45278501)
chr7 (1-37)||(245347-245383)
[»] chr4 (10 HSPs)
chr4 (1-62)||(46494481-46494542)
chr4 (1-62)||(30970467-30970528)
chr4 (1-62)||(36192529-36192590)
chr4 (1-62)||(51066481-51066542)
chr4 (1-62)||(51714048-51714109)
chr4 (1-62)||(8740436-8740497)
chr4 (1-62)||(50905736-50905797)
chr4 (1-62)||(39863861-39863922)
chr4 (1-62)||(2294793-2294854)
chr4 (1-62)||(32139152-32139213)
[»] chr2 (15 HSPs)
chr2 (1-62)||(25987745-25987806)
chr2 (1-62)||(40156028-40156089)
chr2 (1-62)||(6672876-6672937)
chr2 (1-57)||(45137053-45137109)
chr2 (1-62)||(2357158-2357219)
chr2 (1-62)||(2754134-2754195)
chr2 (1-62)||(5039408-5039469)
chr2 (1-62)||(7860229-7860290)
chr2 (1-61)||(21637886-21637946)
chr2 (1-62)||(10745315-10745376)
chr2 (1-62)||(17136375-17136436)
chr2 (1-62)||(36380215-36380276)
chr2 (1-62)||(36836412-36836473)
chr2 (1-58)||(3200873-3200930)
chr2 (1-62)||(44650381-44650442)
[»] chr6 (4 HSPs)
chr6 (1-61)||(14496341-14496401)
chr6 (1-62)||(35163833-35163894)
chr6 (1-62)||(2711817-2711878)
chr6 (1-62)||(19686910-19686971)
[»] chr8 (10 HSPs)
chr8 (1-62)||(19723299-19723360)
chr8 (1-61)||(4840129-4840189)
chr8 (1-62)||(22711497-22711558)
chr8 (1-62)||(24475079-24475140)
chr8 (1-62)||(27881071-27881132)
chr8 (1-62)||(28021252-28021313)
chr8 (1-62)||(29767176-29767237)
chr8 (1-62)||(11403989-11404050)
chr8 (1-62)||(11610268-11610329)
chr8 (9-62)||(28739652-28739705)
[»] chr5 (3 HSPs)
chr5 (1-62)||(20983086-20983147)
chr5 (1-62)||(17064311-17064372)
chr5 (1-62)||(37976534-37976595)
[»] chr3 (11 HSPs)
chr3 (1-62)||(7417786-7417847)
chr3 (1-62)||(8400843-8400904)
chr3 (1-62)||(35198753-35198814)
chr3 (1-62)||(48078024-48078085)
chr3 (1-62)||(50726080-50726141)
chr3 (1-62)||(50786707-50786768)
chr3 (1-62)||(52545309-52545370)
chr3 (1-59)||(50823689-50823747)
chr3 (1-59)||(50852113-50852171)
chr3 (1-59)||(55467990-55468048)
chr3 (1-62)||(22855875-22855936)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-62)||(107774-107835)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 44438633 - 44439090
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctgcttattttttactttggttgaatgcaatagttatatat 100  Q
    |||||||||||||||||||| ||| || |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44438633 tttacctccctccaaaggcattagcggagctcgaacccaaattctcttaaattcaagacctgcttattttttactttggttgaatgcaatagttatatat 44438732  T
Q  101 attttttatttgtgtgacgaaattgaatgcaatagttgcttcactcataagag--ggnnnnnnnngtgagagttaactctcaaatccttaataatttgta 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||        |||||||||||||||||||||||||||||||||||    
T  44438733 attttttatttgtgtgacgaaattgaatgcaatagttgtttcactcataagagagggaaaaaaaagtgagagttaactctcaaatccttaataatttgta 44438832  T
Q  199 gaagtgccaacacattactcaggtcacattagtgttgaatgtaaaacaaacacttcaatgtctataggtataggcaaagaattgtatccaatagaattca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44438833 gaagtgccaacacattactcaggtcacattagtgttgaatgtaaaacaaacacttcaatgtctataggtataggcaaagaattgtatccaatagaattca 44438932  T
Q  299 atgtagtttcaatattaacgcaatacgcaagtaacgcgttgcaggagcattgtcttacgctgaacttacaccatcaatccacattaacggaacaaactaa 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44438933 atgtagtttcaatattaacgcaatacgcaagtaacgcgttgcaggagcattgtcttacgctgaacttacaccatcaatccacattaacggaacaaactaa 44439032  T
Q  399 cagtttactgatagtgctaccagtttactgtgattggtcaattcatatacgtggcgtc 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44439033 cagtttactgatagtgctaccagtttactgtgattggtcaattcatatacgtggcgtc 44439090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21090164 - 21090103
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||    
T  21090164 tttacctccctccaacggcactagcggggctcgaacccgaattctctcgaattcaagacctg 21090103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30054525 - 30054583
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 59  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||||    
T  30054525 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagac 30054583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4573428 - 4573367
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||| || ||||||||||||||||||  |||||| ||||||||||||||    
T  4573428 tttacctccctccaaagacattagtggggctcgaacccgggttctctcggattcaagacctg 4573367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30370143 - 30370198
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaa 56  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||    
T  30370143 tttacctccctccaaagacactagtggggctcgaacccggattctctcgaattcaa 30370198  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 15034501 - 15034443
Alignment:
Q  4 acctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||| ||||||||||| |  |||| | ||||||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctg 15034443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20014507 - 20014450
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 58  Q
    |||||||||||||||||| ||||| ||| ||||||||||  |||||| ||||||||||    
T  20014507 tttacctccctccaaaggtactagcgggactcgaacccgggttctctcggattcaaga 20014450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30850923 - 30850980
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 58  Q
    ||||||||||||||||| |||||  ||||||||||||||| |||||| ||||| ||||    
T  30850923 tttacctccctccaaagacactaacggggctcgaacccgagttctctcggatttaaga 30850980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45324055 - 45323994
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||| ||||||| |||||| ||||||   |||||| ||||||||||||||    
T  45324055 tttacctccctccaaaagcactagcggggctggaacccaggttctctcggattcaagacctg 45323994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12025230 - 12025193
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaaccc 38  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  12025230 tttaccttcctccaaaggcactaatggggctcgaaccc 12025193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 33763341 - 33763398
Alignment:
Q  5 cctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||| ||||||||||| ||||||||||||   ||||||| | ||||||||||||    
T  33763341 cctccctctaaaggcactagcggggctcgaacctagattctctcgaattcaagacctg 33763398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35109740 - 35109679
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  35109740 tttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctg 35109679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21577181 - 21577242
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||    
T  21577181 tttacctccctccaaaggcattagtggggctcgaacccgggttctctcggattcaagacctg 21577242  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38405237 - 38405298
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  38405237 tttacctccctccaaaggcactagcgaggctcgaactcgaattctctcggattcaagacctg 38405298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12472170 - 12472115
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaa 56  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  12472170 tttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11216818 - 11216757
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||  |||||||||||||    
T  11216818 tttacctccctccaaaggcactaatggggctcgaacccgggttctctcagattcaagacctg 11216757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16059436 - 16059497
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  16059436 tttacctccctgcaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 16059497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38265320 - 38265381
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||    
T  38265320 tttacctccctccaaaggcactagcggggctcgaacccaggttctctcggattcaagacctg 38265381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41151221 - 41151160
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||| |||||| ||||||||||||||  |||||| ||||||||||||||    
T  41151221 tttacctccctccaaagacactagcggggctcgaacccgggttctctcggattcaagacctg 41151160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18117027 - 18117088
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||| ||||||||||| | ||||||||||||  |||||| ||||||||||||||    
T  18117027 tttacctccctctaaaggcactagcgtggctcgaacccgggttctctcggattcaagacctg 18117088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34721883 - 34721822
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| |||||| ||| |||  |||||| ||||||||||||||    
T  34721883 tttacctccctccaaaggcactagcggggcttgaatccgggttctctcggattcaagacctg 34721822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48176448 - 48176391
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 58  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  48176448 tttacctccttccaaaggcactagcggggctcgaacccggattctctcggatttaaga 48176391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45278501 - 45278441
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 61  Q
    ||||| ||||| |||||||||||| ||||||||||||||  || ||| |||||||||||||    
T  45278501 tttacttcccttcaaaggcactagcggggctcgaacccgggttatctcggattcaagacct 45278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 245347 - 245383
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  245347 tttacctccctccaagggcactagcggggctcgaacc 245383  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46494481 - 46494542
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  46494481 tttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctg 46494542  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30970467 - 30970528
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  30970467 tttacctcccttcaaaggcactagtgaggctcgaacccggattctctcggattcaagacctg 30970528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36192590 - 36192529
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||    
T  36192590 tttacctccctccaaaggcactagtggggctcgaacccgggttctctcgaattcaagacctg 36192529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 51066542 - 51066481
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||    
T  51066542 tttacctccctccaaaggcactagcggagctcgaacccgagttctctcggattcaagacctg 51066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51714048 - 51714109
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  51714048 tttacctcccttcaaaggcactagtggggctcgaacccgggttctctcggattcaagacctg 51714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8740497 - 8740436
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||||||   ||||| ||||||||||||||    
T  8740497 tttacctccctccaaaggcactagcggggctcgaacccgggatctctcggattcaagacctg 8740436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 50905797 - 50905736
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||| ||||||||||||||    
T  50905797 tttacctctctccaaaggcactagcggggctcgaacccagattctctcggattcaagacctg 50905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39863861 - 39863922
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||| |||||||||||||||||| ||||  ||||||||  |||||| ||||||||||||||    
T  39863861 tttacttccctccaaaggcactagcggggtccgaacccgggttctctcggattcaagacctg 39863922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2294793 - 2294854
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||| |||||||||||||||| |   ||||||||||| |||||| | ||||||||||||    
T  2294793 tttaccttcctccaaaggcactagcgaaactcgaacccgagttctctcgaattcaagacctg 2294854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32139213 - 32139152
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||| |||||| |||| ||||||||   |||||| ||||||| ||||||    
T  32139213 tttacctccctccaaagacactagcggggttcgaacccaggttctctcggattcatgacctg 32139152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25987745 - 25987806
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  25987745 tttacctccctccaaaggcactagcggggctcgaacccgagttctctcggattcaagacctg 25987806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40156089 - 40156028
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  40156089 tttacctccctccaaaggcactagcggggctcgaacccggattctctcggattcaagacctg 40156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6672876 - 6672937
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| |||||| |||||||  |||||| ||||||||||||||    
T  6672876 tttacctccctccaaaggcactagcggggcttgaacccgggttctctcggattcaagacctg 6672937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45137053 - 45137109
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaag 57  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||    
T  45137053 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2357158 - 2357219
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||| ||||||||  ||||||||||  |||||| ||||||||||||||    
T  2357158 tttacctccctccaaaggtactagtggaactcgaacccgggttctctcggattcaagacctg 2357219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2754134 - 2754195
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||| ||||||| |||||| |||  |||||| ||||||||||||||    
T  2754134 tttacctccctccaaaggcattagtgggactcgaatccgggttctctcggattcaagacctg 2754195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5039469 - 5039408
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||| ||| ||||||| || |||||||||||| |||||| ||||||||||||||    
T  5039469 tttacctccctctaaaagcactagcggagctcgaacccgagttctctcggattcaagacctg 5039408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7860229 - 7860290
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||| |||||   |||||| ||||||||||||||    
T  7860229 tttacctccctccaaaggcactagcggggctcaaacccaggttctctcggattcaagacctg 7860290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21637946 - 21637886
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 61  Q
    |||||||||||||||||||||||| ||||||| ||||||  |||||| | |||||||||||    
T  21637946 tttacctccctccaaaggcactagcggggctcaaacccgggttctctcgaattcaagacct 21637886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10745315 - 10745376
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||| ||||||||||| |||||||| |||||  |||||| | ||||||||||||    
T  10745315 tttacctccctctaaaggcactagcggggctcggacccgggttctctcgaattcaagacctg 10745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17136436 - 17136375
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||  ||||||||||||||  ||||||  ||||||| |||||    
T  17136436 tttacctccctccaaaggcactaacggggctcgaacccgggttctctcagattcaaaacctg 17136375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36380215 - 36380276
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| |||| || ||||||| || ||| | ||||||||||||    
T  36380215 tttacctccctccaaaggcactagcggggttcaaacccgagttttctcgaattcaagacctg 36380276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36836412 - 36836473
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||||||| || ||| ||||||| ||  |||||| ||||||||||||||    
T  36836412 tttacctccctccaaaggcaccagcgggactcgaactcgggttctctcggattcaagacctg 36836473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3200930 - 3200873
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaaga 58  Q
    |||||||||||||||||||||||| | |||||||| ||   ||||||| |||||||||    
T  3200930 tttacctccctccaaaggcactagcgaggctcgaatccaggttctcttagattcaaga 3200873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44650442 - 44650381
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||  || |||||||  ||  |||||| ||||||||||||||    
T  44650442 tttacctccctccaaaggcactaacggagctcgaaatcgggttctctcggattcaagacctg 44650381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14496401 - 14496341
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 61  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  14496401 tttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacct 14496341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35163833 - 35163894
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||| |||||||||||||||||   |||||| ||||||||||||||    
T  35163833 tttacctccctccaaaggcattagtggggctcgaaccctggttctctcggattcaagacctg 35163894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2711817 - 2711878
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||| |||||||||||||||||| ||   |||| | ||||||||||||||    
T  2711817 tttacctccctccaaaagcactagtggggctcgaatccaggttctatcggattcaagacctg 2711878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19686910 - 19686971
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||| |||||||||||||   ||||||  |||||||||||||    
T  19686910 tttacctccctacaaaggcactagaggggctcgaacccaggttctctcagattcaagacctg 19686971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19723360 - 19723299
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  19723360 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 19723299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4840189 - 4840129
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacct 61  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| |||||||| ||||    
T  4840189 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaaaacct 4840129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22711558 - 22711497
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||| |||| || ||| ||||||| |||||| ||||||||||||||    
T  22711558 tttacctccctccaaaggcattagttggactcaaacccgagttctctcggattcaagacctg 22711497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24475079 - 24475140
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| || |||||||  |||||||| | ||||||||||||||    
T  24475079 tttacctccctccaaaggcactagcggagctcgaattcgaattctatcggattcaagacctg 24475140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27881071 - 27881132
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||| ||||||||||||||  ||||||  |||||||||||||    
T  27881071 tttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctg 27881132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28021252 - 28021313
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||| ||||||||||||||  ||||||  |||||||||||||    
T  28021252 tttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctg 28021313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29767237 - 29767176
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||||||| ||||||||| ||||  ||||||  |||||||||||||    
T  29767237 tttacctcccttcaaaggcactagcggggctcgaccccgggttctctcagattcaagacctg 29767176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11404050 - 11403989
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||| |||||| | |||||||||||   |||||| | ||||||||||||    
T  11404050 tttacctccctccaaagacactagcgaggctcgaacccaggttctctcgaattcaagacctg 11403989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11610329 - 11610268
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||  ||||||||||||||| | |||||||| ||||  ||||| ||||||||||||||    
T  11610329 tttacctttctccaaaggcactagcgaggctcgaatccgagatctctcggattcaagacctg 11610268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 28739652 - 28739705
Alignment:
Q  9 cctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||||||||| ||||||   |||||| | ||||||||||||    
T  28739652 cctccaaaggcactagtggggcttgaacccaggttctctagaattcaagacctg 28739705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20983086 - 20983147
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  20983086 tttacctctctccgaaggcactagcggggctcgaacccggattctcttggattcaagacctg 20983147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17064372 - 17064311
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||||    
T  17064372 tttacctccctccaaaggcactagcgaggctcgaacccgggttctctcggattcaagacctg 17064311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37976595 - 37976534
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||| ||||||| |||||||||||||   |||||| ||||||||||||||    
T  37976595 tttacctcccttcaaatgcactagcggggctcgaacccaggttctctcggattcaagacctg 37976534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7417847 - 7417786
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  7417847 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 7417786  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8400904 - 8400843
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  8400904 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcggattcaagacctg 8400843  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35198814 - 35198753
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||| |||||||| ||||||||||||||||||  |||||| ||||||||||||||    
T  35198814 tttacctccctgcaaaggcattagtggggctcgaacccgggttctctcggattcaagacctg 35198753  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48078024 - 48078085
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||| | ||||||||||||    
T  48078024 tttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaattcaagacctg 48078085  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50726080 - 50726141
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||||||    
T  50726080 tttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctg 50726141  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 50786768 - 50786707
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||| ||||||||| |||||  |||||||||||||||||||||| ||||||||||||||    
T  50786768 tttaccttcctccaaagacactaacggggctcgaacccgaattctctcggattcaagacctg 50786707  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 52545370 - 52545309
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||  ||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  52545370 tttacctccctttaaaggcactagcggggctcgaacccgaattttctcggattcaagacctg 52545309  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50823747 - 50823689
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 59  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||| |||||||||||    
T  50823747 tttacctccctccaaaggcactaacgggactcgaacccggattctctcggattcaagac 50823689  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50852113 - 50852171
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 59  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||| |||||||||||    
T  50852113 tttacctccctccaaaggcactaacgggactcgaacccggattctctcggattcaagac 50852171  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 55468048 - 55467990
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagac 59  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||| | |||||||||    
T  55468048 tttacctccctccaaacgcattagtggggctcgaacccggattctctcgaattcaagac 55467990  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22855936 - 22855875
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    ||||||||||||||||| |||||| |||||||||||| |  |||||| | ||| ||||||||    
T  22855936 tttacctccctccaaagacactagcggggctcgaacctgggttctctcgaatttaagacctg 22855875  T

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Target: scaffold0021 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 107774 - 107835
Alignment:
Q  1 tttacctccctccaaaggcactagtggggctcgaacccgaattctcttggattcaagacctg 62  Q
    |||||||||||||||||||||||| ||||||||||| ||  |||||| | ||||||||||||    
T  107774 tttacctccctccaaaggcactagcggggctcgaactcgggttctctcgaattcaagacctg 107835  T

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