View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_1 (Length: 1108)
Name: NF9072_low_1
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 748; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 191 - 1090
Target Start/End: Original strand, 16584425 - 16585320
Alignment:
| Q |
191 |
tatattacaatgtgcaagcatggttatttctgaaatattttatgttgtgctttgtgaaaaattttggaattaagtgaaatcgaatataaatttttctttg |
290 |
Q |
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| T |
16584425 |
tatattacaatgtgcaagcatggttatttctgaaatattttatgttgtgctttgtgaaaaaaattggaattaagtgaaatcgaatagaaatttttctttg |
16584524 |
T |
|
| Q |
291 |
attaaagatttgaataaactctgatagtcatcaaaattcaaccagagaatgtatatgtcgtttgtagttgtagagaaattttgagtcgttactttttaga |
390 |
Q |
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| T |
16584525 |
attaaagatttgaataaactctgatagtcatcaaaatttaaccagagaatgtatatgtcgtttgtagttgaagagaaattttgagtcgttactttttaga |
16584624 |
T |
|
| Q |
391 |
agtactagaatgagannnnnnnnncttcgagaaaagaggttgtcacttgattagaggtttctgagtagcacgataattttaaactgttctataaaggtta |
490 |
Q |
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| T |
16584625 |
agtactagaatgagatttttttttcttcgagaaaagaggttgtcacttgattagaagtttttgagtagcacgataattttaaactgttctataaaggtta |
16584724 |
T |
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| Q |
491 |
gaattgtcaaagaagtataatagagcattatcaagtaacgtatgtccgaatcattagtgtactagatccgatttatttccaaaccacacacttactatat |
590 |
Q |
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| T |
16584725 |
gaattgtcaaagaagtataatagagcattatcaagtaacgtatgtccgaatcattagtgtactagatccgatttatttccaaaccacacacttactatat |
16584824 |
T |
|
| Q |
591 |
atagtata----agactgtggtccaagaatcataaaaacacaaaattttgctctctactctctctaggtcacagaccagcaccacaactcgctcattttt |
686 |
Q |
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| T |
16584825 |
atagtatatataagactgtggtccaagaatcataaaaacacaaaattttgctctcta---------ggtcacagaccagcaccacaactcgctcattttt |
16584915 |
T |
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| Q |
687 |
agttagattcatgcaaatgtggtaccaaaatgaagctattgacgaatcccacctacccacacatgatctatcagatttcaaagagacattactcctcttt |
786 |
Q |
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| T |
16584916 |
agttagattcatgcaaatgtggtaccaaaatgaagctattgacgaattccacctacccacacatgatctatcagatttcaaagagacattactcctcttt |
16585015 |
T |
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| Q |
787 |
ttacctcttaaagtcacaattttagaactctattaaagggtgta-acttttgctggctttgttgcgtaaagcgcttttataaagtgttgttgatcgttgt |
885 |
Q |
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| T |
16585016 |
ttacctcttaaagtcacaattttagaaccctattaaagggtgtatacttttgctggctttgttgcgtgaagcgcttttttaaagtgttgttgatcgttgt |
16585115 |
T |
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| Q |
886 |
tgtaagaattattatgcaaaaatattcatgtttagatcatttcataaaatttagtgatttttaaaatgtttcaaaatgttgttttcatttgagatatata |
985 |
Q |
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| T |
16585116 |
tgtaagaattattatgcaaaaatattcatgtttagatcatttcataaaatttagtgatttttaaaatgtttcaaaatgttgttttcatttgagatatata |
16585215 |
T |
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| Q |
986 |
aacggctagatccatgattttgtaggtttagttctnnnnnnntattgatttttgataaatacgaaataaaaagggaaaatgtaatattttcttgttgttt |
1085 |
Q |
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| T |
16585216 |
aacggctagatccatgattttgtaggtttagttctaaaaaaatattgatttttgatagatacgaaataaaaagggaaaatgttatattttcttgttgttt |
16585315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 16584227 - 16584400
Alignment:
| Q |
15 |
tggtgttcgttggcgccgcaaaacccttgaagtgaaaaatcctatcaggcaccttgaaggagaaggacgccacacttcattggtatatgaatttacctcg |
114 |
Q |
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| T |
16584227 |
tggtgttcgttggcgccgcaaaacccttgaagtgaaaaatcctatcaggcaccttgaaggagaaggaggccacacttcattggtatatgaatttacctcg |
16584326 |
T |
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| Q |
115 |
tcgtggtttgaaggatttttgatgtgaacccagagtgtttatgctgataaaaataataatgattgcagtttatt |
188 |
Q |
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| T |
16584327 |
tcgtggtttgaaggatttttgctgtgaacccagagtgtttatgctgataaaaataataatgattgcagtttatt |
16584400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 12112083 - 12112025
Alignment:
| Q |
273 |
aatataaatttttctttgattaaagatttgaataaactctgatagtcatcaaaattcaa |
331 |
Q |
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| T |
12112083 |
aatataaattcatctgtgattacagatttgaatggactcttatagtcatcaaaattcaa |
12112025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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