View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9072_low_11 (Length: 567)
Name: NF9072_low_11
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 549
Target Start/End: Complemental strand, 42464162 - 42463624
Alignment:
| Q |
11 |
agtttggagttgatacaagcaaatgtaagggtgtactgtgtagtacttccatactcttaagccttgccttaattattattgattttgatgaatgtatatt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42464162 |
agtttggaattgatacaagcaaatgtaagggtgtactgtgtagtacttccatactcttaagccttgccttaattattattgattttgatgaatgtatatt |
42464063 |
T |
|
| Q |
111 |
tatgctgccagctgtagttgtttcttctcctatcaagcatgttgtaggatatctagagcttgtttagtgtatgtgtataagtatgatagaagaataagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42464062 |
tatgctgccagctgtagttgtttcttctcctatcaagcatgttgtaggatatctagagcttgtttagtgtatgtgtataagtatgatagaagaataagct |
42463963 |
T |
|
| Q |
211 |
tgtaaagtgagtagttgagagatagcttaagcatagagtgacagttataagggaaatgctactgaacacgatacttggagtcttggaannnnnnncaaag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42463962 |
tgtaaagtgagtagttgagagatagcttaagcatagagtgacggttataagggaaatgctactgaacacgatacttggagtcttggaatttttttcaaag |
42463863 |
T |
|
| Q |
311 |
ttccacatctttttagggttcagacctgtgatggaatttggtatttcatgtattttagattaaggaaacaaaaagttaagaaagataaaagaaactatca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42463862 |
ttccacatctttttagggttcagacctgtgatggaatttggtatttcatgtattttagattaaggaaacaaaaagttaagaaagataaaagaaactatta |
42463763 |
T |
|
| Q |
411 |
tctgcttattgtcttgattatttatactcaataattaataatgctgattcaatttnnnnnnntttacagacaaattcaacgttatcttttctagatgctt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42463762 |
tctgcttattgtcttgattatttatactcaatagttaataatgctgattcaatttccccccctttacagacaaattcaacgttatcttttctagatgctt |
42463663 |
T |
|
| Q |
511 |
ttgaggattctgtttccaagtctgaggaatctggacaag |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42463662 |
ttgaggattctgtttccaagtctgaggaatctggacaag |
42463624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 42476796 - 42476695
Alignment:
| Q |
74 |
ttgccttaattattattgattttgatgaatgtatattta-tgctgccagctgtagttgtttcttctcctatcaagcatgttgtaggatatctagagcttg |
172 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||| ||||| || ||| ||||||||||||| ||||||||| |
|
|
| T |
42476796 |
ttgctttaattattattgattttgatggatgtatatttagtgctgcaagctttagttgtttcctctccaatttagcgtgttgtaggatatatagagcttg |
42476697 |
T |
|
| Q |
173 |
tt |
174 |
Q |
| |
|
|| |
|
|
| T |
42476696 |
tt |
42476695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 42469380 - 42469315
Alignment:
| Q |
229 |
gagatagcttaagcatagagtgacagttataagggaaatgctactgaacacgatacttggagtctt |
294 |
Q |
| |
|
||||| |||||| |||| |||| ||||||||||||||||| |||||||||| || |||||| |||| |
|
|
| T |
42469380 |
gagatggcttaatcatacagtggcagttataagggaaatgatactgaacacaattcttggattctt |
42469315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 42475634 - 42475576
Alignment:
| Q |
229 |
gagatagcttaagcatagagtgacagttataagggaaatgctactgaacacgatacttg |
287 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
42475634 |
gagatagcttagtcatatagtggcagttataagggaaatggtactgatcacaatacttg |
42475576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 42489988 - 42489944
Alignment:
| Q |
498 |
tttctagatgcttttgaggattctgtttccaagtctgaggaatct |
542 |
Q |
| |
|
||||| || ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
42489988 |
tttctggaggctcttgaggattctgtctccaagtctgaggaatct |
42489944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University