View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_13 (Length: 526)
Name: NF9072_low_13
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 480859 - 480344
Alignment:
| Q |
9 |
agcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgctaatt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480859 |
agcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgctaatt |
480760 |
T |
|
| Q |
109 |
aggcactgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
480759 |
aggcactgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaattcatccacatactgcatataaaatgcaaccaaattga |
480660 |
T |
|
| Q |
209 |
agcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480659 |
agcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatg |
480560 |
T |
|
| Q |
309 |
acaagtaattaggatggcttgcataagctggaacctgatgaaggtataacatgacaaaggtnnnnnnnnnnnnnnnnnnnagtaaatagaataactagtt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
480559 |
acaagtaattaggatggcttgcataagctggaacctgatgaaggtataacatgacagaggt------tatatgatatataagtaaatagaataactagtt |
480466 |
T |
|
| Q |
409 |
ttgattacatttatctatcttagaataatatag------ttattccttaaagcaatcac--------------ttattacatgttgatccaaaaccttaa |
488 |
Q |
| |
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|||||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
480465 |
ttgattacatttatct-tattagaataatatagttattcttattccttaaagcaatcacataagtgagtttgaatattacatgttgatccaaaaccttaa |
480367 |
T |
|
| Q |
489 |
cgcatatatatgatatgtgtttt |
511 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
480366 |
cgcatatatatgatatgtgtttt |
480344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 475396 - 475054
Alignment:
| Q |
10 |
gcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgct----a |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| | ||| | |||||| ||||| ||||||| ||||||||| ||| | | | |
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| T |
475396 |
gcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgcagaccccataattccctgcaaaatgtatttatttattacaa |
475297 |
T |
|
| Q |
106 |
attaggc-actgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaa |
204 |
Q |
| |
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||||||| ||| | |||||||||| || |||||||||||||| |||||||||| ||| ||||| || ||||||||||||||| ||||||||| |
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| T |
475296 |
attaggccactcaatgtgtattaattaata---atatatacaagtattgttgtatcatcatggaaaat-atgggcatactgcatataaagcgcaaccaaa |
475201 |
T |
|
| Q |
205 |
ttgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgta |
304 |
Q |
| |
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|||||| | |||||| || ||||| |||| ||||||| || | ||||| |||||||| || |||||| ||||| | ||| |||||||||||||||| | |
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| T |
475200 |
ttgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatgttgccatgaaacacatccatgctgaa |
475101 |
T |
|
| Q |
305 |
aatgacaagtaattaggatggcttgcataagctggaacctgatgaag |
351 |
Q |
| |
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| ||| || ||||| ||||| ||||||||||||||||||||| |||| |
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| T |
475100 |
agtgataaataattgggatgacttgcataagctggaacctgaagaag |
475054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 457731 - 457391
Alignment:
| Q |
10 |
gcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgta-------attactg |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| | ||| | |||||| ||||| ||||||| ||||||||| ||||| |
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| T |
457731 |
gcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgcagaccccataattccctgcaaaatgtatttatttattacaa |
457632 |
T |
|
| Q |
103 |
ctaattaggc-actgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaaatcatccacata--ctgcatataaaatgcaa |
199 |
Q |
| |
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| |||||||| ||| | ||||||| |||||||||| |||||| |||||| |||||| | || ||| | ||||||| ||||||||||| |||| |
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| T |
457631 |
caaattaggccacttaaaatgtattcatttatttatttatatataagtat-----tatcatgaaaaataattaaccacatatactgcatataaagtgcac |
457537 |
T |
|
| Q |
200 |
ccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatg |
299 |
Q |
| |
|
||||||||||| | |||||| || ||||| |||| ||||||| |||| |||||| || | || || |||||| ||||| || |||||||||||||| | |
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| T |
457536 |
ccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgattgtaatgttgaaattaaacacatccaag |
457437 |
T |
|
| Q |
300 |
ctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
345 |
Q |
| |
|
||| ||||| | ||||||||||||||||| |||||||||||||| |
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|
| T |
457436 |
ctgacaatgatatataattaggatggcttgcgtaagctggaacctg |
457391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 449439 - 449108
Alignment:
| Q |
10 |
gcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgctaatt- |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||| | ||| ||||| |||||||| ||||||| ||||| || ||| | | |||| |
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| T |
449439 |
gcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataattccctgaaaaatatatttattacaaatta |
449340 |
T |
|
| Q |
109 |
aggcactgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattga |
208 |
Q |
| |
|
|| |||||||||| |||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||| | |||| |
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| T |
449339 |
agccactgatgatatattaattta-ttatata----------------tatcatcatgaaaattcatccacatactgcatataaagtgcaaccgagttga |
449257 |
T |
|
| Q |
209 |
agcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatg |
308 |
Q |
| |
|
| | ||| || |||||||| |||| | || || || | ||||| || |||| || |||||| ||||| ||||||| ||||||||| |||| |||| |
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| T |
449256 |
actagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatgttgacattatacacatccaggctgacaatg |
449157 |
T |
|
| Q |
309 |
acaagtaattaggatggcttgcataagctggaacctgatgaaggtataa |
357 |
Q |
| |
|
| || ||||||||||||||||| |||| |||||||||| |||| ||||| |
|
|
| T |
449156 |
ataaataattaggatggcttgcgtaagatggaacctgaggaagatataa |
449108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 345
Target Start/End: Complemental strand, 468691 - 468516
Alignment:
| Q |
170 |
aatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttg |
269 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||||||| ||| || |||||||| |||| | ||||| || | ||||| |||||||| || || |
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|
| T |
468691 |
aatcatccacatacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctg |
468592 |
T |
|
| Q |
270 |
attgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
345 |
Q |
| |
|
|||| ||||| | ||| |||||||||||||| || ||| |||||||| ||||| |||||||||||||||||||| |
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|
| T |
468591 |
attgtaatgttgccatgaaacacatccatgcacaaagtgataagtaattgggatgacttgcataagctggaacctg |
468516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 468842 - 468757
Alignment:
| Q |
9 |
agcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgt |
94 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||| || || |||||||||||||||| | ||||| |||||||| |
|
|
| T |
468842 |
agcagagaagagaggtcctctccttgaaatgcaccatgcttggagacagtatattactgcagatcccataactccctgcaaaatgt |
468757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 27489876 - 27490212
Alignment:
| Q |
9 |
agcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgctaatt |
108 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||| | || | |||||| |||||||| | ||||||||||||||| ||| | ||||| |
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|
| T |
27489876 |
agcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttattcttaatt |
27489975 |
T |
|
| Q |
109 |
aggcac-tgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattg |
207 |
Q |
| |
|
||| | ||||||||||| ||||||| ||||||| |||||||| || |||||| ||| || ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27489976 |
aggaaaatgatgatgtatcaatttat--atatatagacaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattg |
27490073 |
T |
|
| Q |
208 |
aagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaat |
307 |
Q |
| |
|
||| | |||| | |||||||| ||||||| |||| |||| ||||| ||| |||| || |||||| ||||| | ||||||||||||||| |||| || |
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|
| T |
27490074 |
aagtagagaagtaatcttccacgcatttagatctgcctccatgaatagtgtcactagtgatgattgtaatgttgccattaaacacatccaggctgaaaga |
27490173 |
T |
|
| Q |
308 |
gacaagtaattaggatggcttgcataagctggaacctga |
346 |
Q |
| |
|
|| ||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
27490174 |
gataaggtatttggatggcttgcatatgctggaacctga |
27490212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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