View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_14 (Length: 523)

Name: NF9072_low_14
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_14
NF9072_low_14
[»] chr8 (10 HSPs)
chr8 (136-505)||(6580464-6580837)
chr8 (345-505)||(6616430-6616590)
chr8 (349-505)||(6757704-6757861)
chr8 (349-474)||(6659740-6659866)
chr8 (349-474)||(6740142-6740268)
chr8 (16-141)||(6581019-6581144)
chr8 (16-64)||(6612385-6612433)
chr8 (271-325)||(35793178-35793232)
chr8 (290-329)||(5945357-5945396)
chr8 (271-325)||(22786554-22786608)
[»] scaffold0470 (2 HSPs)
scaffold0470 (345-505)||(5716-5876)
scaffold0470 (16-64)||(1673-1721)
[»] chr4 (2 HSPs)
chr4 (275-325)||(9116266-9116316)
chr4 (275-329)||(40202280-40202334)
[»] chr3 (5 HSPs)
chr3 (275-325)||(39994200-39994250)
chr3 (275-325)||(4037150-4037200)
chr3 (275-325)||(10688617-10688667)
chr3 (275-325)||(11233515-11233565)
chr3 (275-325)||(49279498-49279548)
[»] chr7 (5 HSPs)
chr7 (275-326)||(36436058-36436109)
chr7 (275-325)||(16876748-16876798)
chr7 (275-325)||(18867959-18868009)
chr7 (275-325)||(23185934-23185984)
chr7 (275-325)||(46425349-46425399)
[»] chr6 (3 HSPs)
chr6 (275-325)||(6139327-6139377)
chr6 (275-325)||(7506641-7506691)
chr6 (275-325)||(9928270-9928320)
[»] chr2 (4 HSPs)
chr2 (275-325)||(3496810-3496860)
chr2 (275-325)||(11226155-11226205)
chr2 (275-325)||(15141889-15141939)
chr2 (275-325)||(19037078-19037128)
[»] chr1 (5 HSPs)
chr1 (271-325)||(26478571-26478625)
chr1 (275-325)||(27032331-27032381)
chr1 (275-325)||(27907712-27907762)
chr1 (275-325)||(51748561-51748611)
chr1 (275-324)||(24671166-24671215)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 136 - 505
Target Start/End: Complemental strand, 6580837 - 6580464
Alignment:
Q  136 aacctagaaaacaagagtgacaga--ccacaaaggacaaaaacattaacaccatgttgtgagaaaaataga--ataaaaagaatctcattttggttatca 231  Q
    |||||| |||||||||||||||||  |||  |||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  6580837 aacctaaaaaacaagagtgacagagaccaggaaggacaaaagcattgacaccatgttgtgagaaaaatagagaataaaaagaatctcattttggctatca 6580738  T
Q  232 tcgacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaaat 331  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6580737 tctacttttgatgtattggtgcctcaagtgtattttagtaataattaaaataaatcaattatatgagagagaatgagtagttaaaagagaaatatgaaat 6580638  T
Q  332 gatacatttgttgcttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgat 431  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  6580637 gatacatttgttgcttgtcaagcactatggattaaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttctcgctaacaattgat 6580538  T
Q  432 ttagcaaattatcaattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagtt 505  Q
    |||| |||||||||||||||||||||| ||| ||||||||||| | |||||||| |||||||||| ||||||||    
T  6580537 ttagaaaattatcaattaaccatggaaaaagcaagcatgttgaaaggagatttcgcttactaagagataaagtt 6580464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 345 - 505
Target Start/End: Complemental strand, 6616590 - 6616430
Alignment:
Q  345 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 444  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  6616590 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 6616491  T
Q  445 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagtt 505  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  6616490 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagtt 6616430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 349 - 505
Target Start/End: Complemental strand, 6757861 - 6757704
Alignment:
Q  349 tcaagcactaaggattgaaatgtt-gcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatcaat 447  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6757861 tcaagcactatggattgaaatgtttgcttgaagaattgaagattattgagattgcttgaatgaaacttctttttgacaattgatttagcaaattagcaat 6757762  T
Q  448 taaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagtt 505  Q
    ||||||||||||||| ||||||||||| | |||||||||||| |||||| || |||||    
T  6757761 taaccatggaagaagcaagcatgttgaaaggagatttcacttcctaagagatcaagtt 6757704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 474
Target Start/End: Complemental strand, 6659866 - 6659740
Alignment:
Q  349 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 447  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6659866 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6659767  T
Q  448 taaccatggaagaagtaagcatgttga 474  Q
    ||||||||||||||| |||||||||||    
T  6659766 taaccatggaagaagcaagcatgttga 6659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 349 - 474
Target Start/End: Complemental strand, 6740268 - 6740142
Alignment:
Q  349 tcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaatta-tcaat 447  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6740268 tcaagtactatggattgaaatgttgcttgaagaattgaagattattgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattactcaat 6740169  T
Q  448 taaccatggaagaagtaagcatgttga 474  Q
    ||||||||||||||| |||||||||||    
T  6740168 taaccatggaagaagcaagcatgttga 6740142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 6581144 - 6581019
Alignment:
Q  16 agagaggaggggataaggagagaaatatgaggcatatatagtagacgtataaaagaaccgacatcgtagatgttttaaggaaagagacacaagggaccac 115  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||    
T  6581144 agagaggaggggataaggagagaaatatgaagcatatataatagatgtataaaagaacccacatcgaagattttttaaggaaagagatacaagggaccac 6581045  T
Q  116 aacttcaactctttcacttaaaccta 141  Q
    ||||||||||||||||  ||||||||    
T  6581044 aacttcaactctttcaagtaaaccta 6581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 6612433 - 6612385
Alignment:
Q  16 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612433 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 6612385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 35793232 - 35793178
Alignment:
Q  271 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||||||| | |||||||||||| ||||||||||||| |||||||||    
T  35793232 aataattaaaataaattatttaaatgagagataatgagtagttaagagagagata 35793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 5945357 - 5945396
Alignment:
Q  290 ttaaatgagagagaatgagtagttaaaagagagatatgaa 329  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5945357 ttaaatgagagagaatgattagttaaaagagagatatgaa 5945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 22786608 - 22786554
Alignment:
Q  271 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||| ||||| | |||||||| ||||||||| | |||||||||||||||    
T  22786608 aataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagagagata 22786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 345 - 505
Target Start/End: Complemental strand, 5876 - 5716
Alignment:
Q  345 cttgtcaagcactaaggattgaaatgttgcttgaagaattgaagattactgagattgcttgaatgaaacttcttgttgacaattgatttagcaaattatc 444  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  5876 cttgtcaagcactatggattgaaatgttgcttgaagaattgaatattactgagattgcttgaatgaaacttcttgttaacaattcatttagcaaattatc 5777  T
Q  445 aattaaccatggaagaagtaagcatgttgagatgagatttcacttactaagatataaagtt 505  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  5776 aattaaccatggaaaaagcaagcatgttgaaaggagatttcacttactaagagataaagtt 5716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 1721 - 1673
Alignment:
Q  16 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1721 agagaggaggggataaggagagaaatatgaggcatatatagtagacgta 1673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 9116266 - 9116316
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  9116266 attaaaataaattatttaaatgagagagaatgagttgttaaaaaagagata 9116316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 40202280 - 40202334
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatatgaa 329  Q
    |||||||||||| | ||| |||| ||||||||||| ||||||||||| |||||||    
T  40202280 attaaaataaattatttagatgaaagagaatgagtggttaaaagagacatatgaa 40202334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 39994250 - 39994200
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| |||||||||||||||    
T  39994250 attaaaataaattatttagatgagagagaatgagttgttaaaagagagata 39994200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 4037200 - 4037150
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  4037200 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 4037150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 10688667 - 10688617
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  10688667 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 10688617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 11233565 - 11233515
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11233565 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11233515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 49279548 - 49279498
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  49279548 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 49279498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 36436058 - 36436109
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagatat 326  Q
    |||||||||||||| ||  |||||||||||||| |||||| |||||||||||    
T  36436058 attaaaataaatcattttgatgagagagaatgattagttagaagagagatat 36436109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 16876748 - 16876798
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  16876748 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 16876798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 18867959 - 18868009
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  18867959 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 18868009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 23185934 - 23185984
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  23185934 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 23185984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 46425349 - 46425399
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  46425349 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 46425399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 6139377 - 6139327
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||| | |||||||||||||||    
T  6139377 attaaaataaattatttagatgagagagaatgaatggttaaaagagagata 6139327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 7506691 - 7506641
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  7506691 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 7506641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 9928320 - 9928270
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  9928320 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 9928270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 3496810 - 3496860
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  3496810 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 3496860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 11226205 - 11226155
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  11226205 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 11226155  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 15141939 - 15141889
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||| ||| |||||||||||||||    
T  15141939 attaaaataaattatttagatgagagagaataagttgttaaaagagagata 15141889  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 19037078 - 19037128
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  19037078 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 19037128  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 26478625 - 26478571
Alignment:
Q  271 aataattaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||||||||| |||||||| ||| ||||| | ||||||||| |||||    
T  26478625 aataattaaaataaatcatttaaatgaaagataatgaattgttaaaagaaagata 26478571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 27032331 - 27032381
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27032331 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27032381  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 27907762 - 27907712
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||| |||||||||    
T  27907762 attaaaataaattatttagatgagagagaatgagttgttaagagagagata 27907712  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 51748611 - 51748561
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagata 325  Q
    |||||||||||| | ||| |||||||||||||||| ||||||||| |||||    
T  51748611 attaaaataaattatttagatgagagagaatgagttgttaaaagaaagata 51748561  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 24671215 - 24671166
Alignment:
Q  275 attaaaataaatcaattaaatgagagagaatgagtagttaaaagagagat 324  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||| ||||    
T  24671215 attaaaataaattatttaaatgagagagaatgagtggttaagagaaagat 24671166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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