View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_16 (Length: 515)
Name: NF9072_low_16
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 503
Target Start/End: Original strand, 1522017 - 1522506
Alignment:
| Q |
11 |
gtgatgagtgatgactaaaccattgttatatatattacctccaaaa-aatccattattatattaggtcattatcccaagactctaaacaccactcgtgag |
109 |
Q |
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| T |
1522017 |
gtgatgagtgatgactaaaccattgttatat----tacctctaaaaaaatccattattatattaggtcattatcccaagactctaaacaccactcgtgag |
1522112 |
T |
|
| Q |
110 |
tgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1522113 |
tgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgct |
1522212 |
T |
|
| Q |
210 |
cctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgatt |
309 |
Q |
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| T |
1522213 |
cctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgatt |
1522312 |
T |
|
| Q |
310 |
cccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaaca |
409 |
Q |
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| T |
1522313 |
cccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatctttcattccataccatgtctcaaaca |
1522412 |
T |
|
| Q |
410 |
aagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattcgtctgtgct |
503 |
Q |
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| T |
1522413 |
aagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatttttttctgaccaaggatcaccaaagtattcgtctgtgct |
1522506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 95 - 503
Target Start/End: Original strand, 1512532 - 1512940
Alignment:
| Q |
95 |
aacaccactcgtgagtgttccaatagacatttacagtagaattaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccac |
194 |
Q |
| |
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|||||||||| ||| | |||||| || ||| ||| |||| ||| || |||||||||||||| |||||||||||||||||| ||| ||||| ||||| |
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| T |
1512532 |
aacaccactcatgacttgtccaattgatattcacattagagttagcctctaacctcctaaattgcttccaatcacgaagggttgccttcaaatcggccac |
1512631 |
T |
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| Q |
195 |
cttggcagtgatgctcctacaacaattggcatggacagtggttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaag |
294 |
Q |
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| T |
1512632 |
cttcgcagtgatgcttcgacaacagttggcatgaatgatcgttactgccctaacatctttactgtcttggcaaaatccactaaaataaagggtatccaag |
1512731 |
T |
|
| Q |
295 |
aaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccat |
394 |
Q |
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| T |
1512732 |
aatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccat |
1512831 |
T |
|
| Q |
395 |
accatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgannnnnnnctgaccaaggatcaccaaagtattc |
494 |
Q |
| |
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||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||| | |
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| T |
1512832 |
accatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattgatcaaatgtttttctgaccaaggatcaccaaggtatac |
1512931 |
T |
|
| Q |
495 |
gtctgtgct |
503 |
Q |
| |
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||||||||| |
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| T |
1512932 |
gtctgtgct |
1512940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 143 - 455
Target Start/End: Original strand, 1517783 - 1518095
Alignment:
| Q |
143 |
ctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtggttacagc |
242 |
Q |
| |
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|||||||||||||| ||||||||| ||||| | |||||||||||||||||| |||| ||||| | ||||||||||||||| |||||||| || | |
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| T |
1517783 |
ctaacctcctaaattgcttccaatcatgaaggactgcctttaaatcagccacctttgcagctatgcttcgacaacaattggcatgaacagtggtcacttc |
1517882 |
T |
|
| Q |
243 |
cctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgagg |
342 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| | || | |||||||| || || |||||||||| ||||||| |
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| T |
1517883 |
cctaaagtctttactatcttgacaaaatccactaaaatagagagtatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgagg |
1517982 |
T |
|
| Q |
343 |
tcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaaga |
442 |
Q |
| |
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|| |||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||||||||||||||||| || || ||| ||||| |
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| T |
1517983 |
tcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagt |
1518082 |
T |
|
| Q |
443 |
aaaatccagtatt |
455 |
Q |
| |
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||||||||||||| |
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| T |
1518083 |
aaaatccagtatt |
1518095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 136 - 457
Target Start/End: Original strand, 16643447 - 16643768
Alignment:
| Q |
136 |
ttaacccctaacctcctaaatcttttccaatcacgaagggttttctttaaatcagccaccttggcagtgatgctcctacaacaattggcatggacagtgg |
235 |
Q |
| |
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|||||| |||||||||||||| ||||||||||| | |||| | |||||||||||||||||| |||||||| || | ||||||||||||||| ||||||| |
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| T |
16643447 |
ttaacctctaacctcctaaattttttccaatcatgtagggctgcctttaaatcagccacctttgcagtgatacttcgacaacaattggcatgaacagtgg |
16643546 |
T |
|
| Q |
236 |
ttacagccctaaaatctttactatcttggcaaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccaccttt |
335 |
Q |
| |
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| || ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| |||||| | || || ||||||| | | |
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| T |
16643547 |
tcactgccctaaaatctttactatcttgacaaaaaccactaaaatagagagtatccaagaacctaaccttgagtcccaagtgtccaattataccatgtct |
16643646 |
T |
|
| Q |
336 |
aatgaggtcctcaagcacatcttgctccnnnnnnnctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctc |
435 |
Q |
| |
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||||||||| ||| ||||||||||| ||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || |
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| T |
16643647 |
aatgaggtcaagaagaacatcttgctctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggacctt |
16643746 |
T |
|
| Q |
436 |
acaaagaaaaatccagtattga |
457 |
Q |
| |
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|||||| ||||||| ||||||| |
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| T |
16643747 |
acaaagtaaaatccggtattga |
16643768 |
T |
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