View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_18 (Length: 504)
Name: NF9072_low_18
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 277 - 493
Target Start/End: Original strand, 42361676 - 42361892
Alignment:
| Q |
277 |
tgaattcaccaggagagacatacaaggtaatttcatgatccaagttgcaacattttgaactttcaactagctggctgtctaaattatggggttctgagct |
376 |
Q |
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| T |
42361676 |
tgaattcactgggaaagacatacaaggcgatttcatgatccaagctgcaacattctgaactttcaactggttggttgtctaaattatgggattctgagct |
42361775 |
T |
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| Q |
377 |
ttctgcggtaggattgatctcaccttcggtagatggattttccaatcctctcctatcatccttatccgtatcatcttcaggtgatttgtctgagtcattg |
476 |
Q |
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| T |
42361776 |
ttctggggtaggattgatgtcactttctgtagatgggttttccgatcctcccctatcatccttattcgtatcatctttaggtgatttgtcagagtcattg |
42361875 |
T |
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| Q |
477 |
tcgacattctctctgct |
493 |
Q |
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| T |
42361876 |
tcgtcattctctttgct |
42361892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 42361390 - 42361538
Alignment:
| Q |
18 |
ttaataattcacacccaactttcaaatttcaaataattaacttaacgaatgaaattcagaaatccaactataaggtcgaccttagcaactttcttccaca |
117 |
Q |
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| T |
42361390 |
ttaataattcacatccaaccttcaaatttcaaataattaatttagccaacgaaattcggaaatccaactataagatcgaccttagcaactttttttcaca |
42361489 |
T |
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| Q |
118 |
cactggttttcttgatgcacaatatatgtaaaagacttccaacttacac |
166 |
Q |
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| T |
42361490 |
cactagttttcatgatacacaatatatccaaaagacttccaacttacac |
42361538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 42354135 - 42354239
Alignment:
| Q |
65 |
aatgaaattcagaaatccaactataaggtcgaccttagcaactttcttccacaca-ctggttttcttgatgcacaatatatgtaaaagacttccaactta |
163 |
Q |
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| T |
42354135 |
aatgaaattcagaaatccaactataaggtcgaccttagcaactttctttcacacacctggttttcatgatacacaatatatccaaaagacttccaactta |
42354234 |
T |
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| Q |
164 |
cacaa |
168 |
Q |
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| T |
42354235 |
cacaa |
42354239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 42355786 - 42355932
Alignment:
| Q |
18 |
ttaataattcacacccaactttcaaatttcaaataattaacttaacgaatgaaattcagaaatccaactataaggtcgaccttagcaactttcttccaca |
117 |
Q |
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| T |
42355786 |
ttaatagttcacattcaaccttcaaatttcaaataattaacttatccaaggaaatttataaatccaactataaagtcgaccttagcaactttctttcaca |
42355885 |
T |
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| Q |
118 |
cactggttttcttgatgcacaatatatgtaaaagacttccaacttac |
164 |
Q |
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| T |
42355886 |
cactggttttcatggcacacaatatacccaaaagacttccaacttac |
42355932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 42355218 - 42355332
Alignment:
| Q |
18 |
ttaataattcacacccaactttcaaatttcaaataattaacttaacgaatgaaattcagaaatccaactataaggtcgaccttagcaactttcttccaca |
117 |
Q |
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| T |
42355218 |
ttaatagttcacattcaaccttcaaatttcaaataattaacttatccaaggaaatttataaatccaactataaagtcgaccttagcaactttctttcaca |
42355317 |
T |
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| Q |
118 |
cactggttttcttga |
132 |
Q |
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| T |
42355318 |
cactggttttcttga |
42355332 |
T |
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