View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9072_low_20 (Length: 503)
Name: NF9072_low_20
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 486
Target Start/End: Complemental strand, 30718682 - 30718214
Alignment:
| Q |
15 |
tgaattgatctgaaattggttacaacaaagcta-tatatagctgtatatgatcctaactaactctaaaaaactattagctatctaggattagaatcatat |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
30718682 |
tgaattgatctgaaattggttacaacaaagctaatataaagctgtatatgatcctaactaactctaacaaactatta----tctaggattagaatcatat |
30718587 |
T |
|
| Q |
114 |
gatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagtttaacaaagaagaaaaa |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30718586 |
gatgctagtacacagtaaagatctatggaatggcagagtaacctgctgcgcaagctatctaatattacaagtaatcacacagtttaacaaagaagaaaaa |
30718487 |
T |
|
| Q |
214 |
gggaggaagagtgcaccaacaaatatcggcgccaaataaattgtgcttaaaccaggataattagggaaccttgcttaatatattggtattctttggtggt |
313 |
Q |
| |
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| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30718486 |
gagagggagagtgcaccaacaaatatcggcgccagataaattgtgcataaaccaggataattagggaaccttgcttaatatattggtattctatggtggt |
30718387 |
T |
|
| Q |
314 |
ttgattttaataatttggagaatcaactaagttcgatgatgaggccgaggggggcatggcggaaaagaagaattatacaaatgcattgtagagatgaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30718386 |
ttgattttaataatttggagaatcaactaagttcgatgatgaggccgaggggggcatggcggaaaagaagaattatacaattgcattgtagagatgaaaa |
30718287 |
T |
|
| Q |
414 |
catagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgatagtg |
486 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
30718286 |
catagcttggcaaaacatgaaaacagtgagctctatctgaacgttaatgcaaaccaattttacgccgatagtg |
30718214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 30054779 - 30055263
Alignment:
| Q |
1 |
aattctagattcattgaattgatctgaaattggttacaacaaagctatatatagctgtatatgatcctaactaactctaaaaaactattagctatctagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30054779 |
aattctagattcattgaattgatctgaaattggttacaacaaagctatatatagctgtatatgatcctaactaactctaaaaaactattagctagctagg |
30054878 |
T |
|
| Q |
101 |
attagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagtttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30054879 |
attagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaatatgctgcgcaagctatctaatattacaagtaatcacacaatttaa |
30054978 |
T |
|
| Q |
201 |
caaagaagaaaaagggaggaagagtgcaccaacaaatatcggcgccaaataaattgtgcttaaaccaggataattagggaaccttgcttaatatattggt |
300 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30054979 |
aaaagaagaaaaagagaaggagagtgcacaaacaaatattggcgccagataaattgtgcat-aaccaggataattagggaaccttgctaaatatattggt |
30055077 |
T |
|
| Q |
301 |
attctttggtggtttgattttaataatttggagaatcaactaagttcgatgatgaggccgaggggggcatggcggaaaagaagaattatacaaatgcatt |
400 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |
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|
| T |
30055078 |
actctctggtggtttgattttaataatttggagaatcaactaagttcgatgatgaggccgagggaggcatggtggaaaagaagaattatacaattgcatt |
30055177 |
T |
|
| Q |
401 |
gtagagatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgatagtg |
486 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
30055178 |
gtagagatgaaaacgtagcttggcaaaacatgaaaacaatgagctctatctgaacgttaatgcaaaacaatttcacgccgatagtg |
30055263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 30682441 - 30681962
Alignment:
| Q |
1 |
aattctagatt-cattgaattgatctgaaattggttacaacaaagcta-tatatagctgtatatgatcctaactaactctaaaaaactattagctatcta |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
30682441 |
aattctagatttcattgaattgatctgaaattggttacaacaaagctaatataaagctctatatgatcctaactaactctaacaaactatta----tcta |
30682346 |
T |
|
| Q |
99 |
ggattagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30682345 |
ggattagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagttt |
30682246 |
T |
|
| Q |
199 |
aacaaagaagaaaaagggaggaagagtgcaccaacaaatatcggcgccaaataaattgtgcttaaaccaggataattagggaaccttgcttaatatattg |
298 |
Q |
| |
|
|| |||||| |||| || | ||||||||| ||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
30682245 |
aaaaaagaa---aaagagaaggagagtgcacaaacaaatattggcgccagataaattgtgcataa-ccaggataattagggaaccttgctaaatatattg |
30682150 |
T |
|
| Q |
299 |
gtattctttggtggtttgattttaataatttggagaatcaactaagttcgatgatgaggccgaggggggcatggcggaaaagaagaattatacaaatgca |
398 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
30682149 |
gcattctctggtggtttgattttaataatttggagaatcaactaagttcgatgatgaggccgagggaggcatggcggaaaagaagaattatacaattgca |
30682050 |
T |
|
| Q |
399 |
ttgtagagatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgatagtg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30682049 |
ttgtagagatgaaaacatagcttggcaaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgatagtg |
30681962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 30430979 - 30431142
Alignment:
| Q |
33 |
gttacaacaaagctatatatagctgtatatgatcctaactaactctaaaaaactattagctatctaggattagaatcatatgatgctagtacacagtaaa |
132 |
Q |
| |
|
||||||||| ||||||||||||||| || | ||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
30430979 |
gttacaacatagctatatatagctgaatttaatcctaactaactgtaactaactattag----ctaggattagaatcatagagagctagtacatagtaaa |
30431074 |
T |
|
| Q |
133 |
gatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagtttaa |
200 |
Q |
| |
|
| | || ||||| ||| |||||||||||||||||||||| || || || |||||||||||||||| |
|
|
| T |
30431075 |
gttttagggaattgcaagataacttgctgcgcaagctatctgttagtagaaataatcacacagtttaa |
30431142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30682555 - 30682494
Alignment:
| Q |
1 |
aattctagattcattgaattgatctgaaattggttacaacaaagctatatatagctgtatat |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30682555 |
aattctagattcattgaattgatctgaaattggttacaagaaagctatataaagctgtatat |
30682494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 30431601 - 30431634
Alignment:
| Q |
299 |
gtattctttggtggtttgattttaataatttgga |
332 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
30431601 |
gtattctttggtggtttgattgtaataatttgga |
30431634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 29155973 - 29156167
Alignment:
| Q |
4 |
tctagattcattgaattgatctgaaattggttacaa-caaagctatatatagctgtatatgatcctaactaactctaaaaaactattagctatctaggat |
102 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||| || |||||||||||||||||||| ||||||| ||| ||||| |||| | |||||||||| |
|
|
| T |
29155973 |
tctagattcattgaattgaaatgagtttg-ttacaatcatagctatatatagctgtatataatcctaagtaagtctaactaactct----tatctaggat |
29156067 |
T |
|
| Q |
103 |
tagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagtttaaca |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29156068 |
tagaatcatatgatgctagtacatagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctattattacaagtaatcacacagtttaaca |
29156167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 6415394 - 6415569
Alignment:
| Q |
4 |
tctagattcattgaattgatctgaaattggttacaacaaagctatatatagctgtatatgatcctaactaactctaaaaaactattagctatctaggatt |
103 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| ||| |||| |||||||||||||||||||| ||||||||||||| || ||||||| ||||| |
|
|
| T |
6415394 |
tctagatttattgaattgatatgagtttg-ttaaaacatagctatatatagctgtatataatcctaactaactata--------ttagcta----ggatt |
6415480 |
T |
|
| Q |
104 |
agaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcaca |
192 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6415481 |
agaatcatatagagctagtacatagtaaagttctatggaatggcaaggtaacttgctgcgcaagctatctattattacaagtaatcaca |
6415569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 8852992 - 8853036
Alignment:
| Q |
32 |
ggttacaacaaagctatatatagctgtatatgatcctaactaact |
76 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
8852992 |
ggttacaacaaacctatatatagctgtttatgatcctaacaaact |
8853036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 13426998 - 13427104
Alignment:
| Q |
96 |
ctaggattagaatcatatgatgctagtacacagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacag |
195 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||| ||||| | || | |||| |
|
|
| T |
13426998 |
ctagggttagaatcatgtgatgctagtacataataaagatctatggaattacagagtaacttgctctgcaagctatctaatgatacaaatgattatacag |
13427097 |
T |
|
| Q |
196 |
tttaaca |
202 |
Q |
| |
|
||||||| |
|
|
| T |
13427098 |
tttaaca |
13427104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 40721779 - 40721703
Alignment:
| Q |
127 |
agtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacacagtttaacaa |
203 |
Q |
| |
|
||||||| | |||||||||||| |||| || |||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
40721779 |
agtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaatcacaccgcttaacaa |
40721703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 40721883 - 40721819
Alignment:
| Q |
28 |
aattggttacaacaaagctatatatagctgtatatgatcctaactaactctaaaaaactattagc |
92 |
Q |
| |
|
|||| ||||||||| || |||||||||||| |||| ||| ||||||||| ||| |||||||||| |
|
|
| T |
40721883 |
aatttgttacaacatagttatatatagctgcatataatcttaactaactgtaactaactattagc |
40721819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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