View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_21 (Length: 491)
Name: NF9072_low_21
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 40905776 - 40905320
Alignment:
| Q |
19 |
tatatggaaatcacttgaaataccacaacaacaaaatcaaaatctatcttatcttttattaaacaatcccaacagcataattctttacatgcaaacttca |
118 |
Q |
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| T |
40905776 |
tatatggaaatcacttgaaataccaaaacaacaaaatcaaaatctagcttatcttttattagacaatcccagtagcataattctttacatgcaaatttca |
40905677 |
T |
|
| Q |
119 |
caaattctcagaaactcaataatcccaaagggattatttatgaaatttatttatataaacaa----ctagaaagataactcagtccacactagtatcgaa |
214 |
Q |
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| T |
40905676 |
caaattctcacaaactcaataatccaaaagggattatttatgaaaattatttatataaataaaaaactagaaagataactcagtccacactagtatggca |
40905577 |
T |
|
| Q |
215 |
tatttcaacagtgtttta---ttttactcctccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaa |
311 |
Q |
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||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40905576 |
tatttcaacagtgttctagagttttactcccccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaa |
40905477 |
T |
|
| Q |
312 |
atggaattgtgtgagtaatgaatttctccagttccagttcctgtaatatcatagtaatatcatattagcaacacaaataacatatcattctgcaatatta |
411 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40905476 |
atggaattgtgtgagtaatgaatttctctagttccagttcctgtaatatcatagtaatatcatattagcaacacaaataacatatcattctgcaatatta |
40905377 |
T |
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| Q |
412 |
attaatcttccgtaacagtgcacgattcgatgtacatatataaacttacccctttcatgta |
472 |
Q |
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| T |
40905376 |
attaatcttccgtaacagtgcacgattcgatg----tatataaacgtacccctttcatgta |
40905320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 49 - 354
Target Start/End: Complemental strand, 40901188 - 40900884
Alignment:
| Q |
49 |
acaaaatcaaaatctatcttatcttttattaaacaatcccaacagcataattctttacatgcaaacttcacaaattctcagaaactcaataatcccaaag |
148 |
Q |
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|||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||| |||| |
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| T |
40901188 |
acaaaatcaaaatctagcttatcttgtattagagaatcccaacagcacaattctttacatgtaaacttcacaaattctcacaaacttcataatccaaaag |
40901089 |
T |
|
| Q |
149 |
ggattatttatgaaatttatttatataaacaactagaaagataactcagtccacactagtatcgaatatttcaacagtgtttta---ttttactcctcca |
245 |
Q |
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| T |
40901088 |
a-attatttatgaaattttttt-tctcaacaaccaaggagagaaatgagtccct--tagtagggattattacatcattgttttagagttttactcctcca |
40900993 |
T |
|
| Q |
246 |
ttcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaatgaatttctccagttc |
345 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| |
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| T |
40900992 |
ttcggatgatgcatctgatggactctcctttcagcatgtaatcaaaagctttgttaatctctgaaaatgggattgagtgagtgatgaatttctcaagttc |
40900893 |
T |
|
| Q |
346 |
cagttcctg |
354 |
Q |
| |
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||| ||||| |
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| T |
40900892 |
cagctcctg |
40900884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 40882305 - 40882184
Alignment:
| Q |
233 |
ttttactcctccattcgtatgatacatctgatggactcccctttcagcatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtaatga |
332 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40882305 |
ttttactcctccattcggatgatacatctgatggactctcctttcaacatgtaatcaaaagctttgttaatctctgaaaatggaattgtgtgagtgatga |
40882206 |
T |
|
| Q |
333 |
atttctccagttccagttcctg |
354 |
Q |
| |
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||||||| |||||||| ||||| |
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| T |
40882205 |
atttctcaagttccagctcctg |
40882184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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