View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_24 (Length: 467)
Name: NF9072_low_24
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 40556851 - 40556398
Alignment:
| Q |
1 |
ctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556851 |
ctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaaca |
40556752 |
T |
|
| Q |
101 |
ccctcatcgcgtctacaatcagcaaccccgcgattctttgattcaagcataccatatttaagactgctaaaatctcttgtcgctgattggttccttcnnn |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40556751 |
ccctcatcgcgtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaagaatgctaaaatctcttgtcgctgattggttccttcttt |
40556652 |
T |
|
| Q |
201 |
nnnncttggttattattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattcttctttgatcgcttacttcttttttccttcactgtaac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40556651 |
ttttcttggttattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattcttctttgatcggttacttcttttttccttcactgtaac |
40556552 |
T |
|
| Q |
301 |
tttcttaaaatcatcgttgcattccgaatcagcagcatagtactcctggttatttgaccgaagaatatgagaaacatcatctttgaattgattagctaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
40556551 |
tttcttaaaatcatcgttgcattccgaatcagcagcatagtactcccggttatttgaccgaagaatataagaaacatcatttttgaattgattagctaag |
40556452 |
T |
|
| Q |
401 |
aacttagatcgcaaacataataaattttccatcatccgataatcatcaccacca |
454 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
40556451 |
aacttagatcgcaaacttagtaaattttccatcatccgataatcatcaccacca |
40556398 |
T |
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