View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_27 (Length: 458)

Name: NF9072_low_27
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_27
NF9072_low_27
[»] chr4 (3 HSPs)
chr4 (211-444)||(5910151-5910384)
chr4 (13-215)||(47421888-47422090)
chr4 (15-218)||(45716907-45717110)
[»] chr7 (3 HSPs)
chr7 (13-218)||(29971058-29971263)
chr7 (13-218)||(17723719-17723924)
chr7 (13-215)||(4934982-4935184)
[»] chr5 (2 HSPs)
chr5 (13-218)||(23241465-23241670)
chr5 (89-197)||(25854311-25854419)
[»] chr3 (3 HSPs)
chr3 (33-218)||(19917083-19917268)
chr3 (15-218)||(2367295-2367498)
chr3 (20-218)||(16187393-16187591)
[»] chr8 (4 HSPs)
chr8 (13-218)||(7927469-7927674)
chr8 (13-108)||(8302887-8302982)
chr8 (88-197)||(20827460-20827569)
chr8 (88-210)||(13876344-13876466)
[»] chr6 (2 HSPs)
chr6 (88-210)||(17603194-17603316)
chr6 (21-214)||(18679496-18679689)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 211 - 444
Target Start/End: Original strand, 5910151 - 5910384
Alignment:
Q  211 cctcccccgaactcctcacagctaaagaacgaagacgcttacgcaacgagcgtagagagagcaacacaacaaactggaaggaagaagttgaaaataaact 310  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5910151 cctcccccgaactcctcacagcaaaagaacgaagacgcttacgcaacgagcgtagagagagcaacgcaacaaactggaaggaagaagttgaaaataaact 5910250  T
Q  311 cattcagaaaaccaaaaaagtgaagaaatcatggaaggatgaactcaaccttgataatctcatgaagttaggtcctcaatggtggggtgttcgtgtttcc 410  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5910251 cattcagaaaaccaaaaaagtgaataaatcatggaaggatgaactcaaccttgataatctcatgaagttaggtcctcaatggtggggtgttcgtgtttcc 5910350  T
Q  411 cgtgttaagggtcagtatactgctgaagctcttg 444  Q
    ||||||||||||||||||||||||||||||||||    
T  5910351 cgtgttaagggtcagtatactgctgaagctcttg 5910384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 47421888 - 47422090
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    |||||| ||||||||| |  ||||||||| ||| ||||| | | ||||||||| ||| ||||||| |||||||||||| ||||| |||||||||||||||    
T  47421888 agacgggctataagaatagtcatgattcgtaggaccccaaaccaaagtacagaaaaactcatcaacaacctccatcttagtttcttgaatacacaacaca 47421987  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    || ||| |||||| |||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||| || |||||||||||  || ||||||    
T  47421988 aatggcttcttttcccgcactaactccttaacttccctacgcttttccatccctcctaaaccccgaacattccacgacacaatcctcattacaaacaccc 47422087  T
Q  213 tcc 215  Q
    |||    
T  47422088 tcc 47422090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 45716907 - 45717110
Alignment:
Q  15 acggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacacaaa 114  Q
    |||| |||||||||||  ||||||| | ||| ||||| | ||||||||| | ||| ||||||| |||||||||||| ||||| |||||||||||||||||    
T  45716907 acgggctataagaaaagtcatgattagtaggaccccaaaccgaagtacataaaaactcatcaacaacctccatcttagtttcttgaatacacaacacaaa 45717006  T
Q  115 aggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctc 214  Q
    |||| |||||| |||||| || |||||||||||||| |||||||||| ||| ||||| ||||| |||||||| || |||||||||||  || ||||||||    
T  45717007 aggcctcttttcccgcactaactccttaacttcccttcgcttttccatccctcctaaaccccggacattccacgacacaatcctcattacaaacaccctc 45717106  T
Q  215 cccc 218  Q
    ||||    
T  45717107 cccc 45717110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 29971058 - 29971263
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    |||||| ||||| |||||| ||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29971058 agacgggctataggaaaaatcatgaatcgaaggtccctaaaacgaagtacagagaaaatcatcaataacctccatctttgtttcttgaatacacaacaca 29971157  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29971158 aaaggcatcttttcccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 29971257  T
Q  213 tccccc 218  Q
    ||||||    
T  29971258 tccccc 29971263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 17723719 - 17723924
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    |||||||||| |||||||  |||||||||  || ||||| ||||||||||| | ||| ||||| ||||| |||| ||||||||| |||||||||||||||    
T  17723719 agacggactaaaagaaaagtcatgattcgtgggtccccataacgaagtacatataaactcatctataacttccaactttgtttcttgaatacacaacaca 17723818  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17723819 aaaggcttcttttcccgcaccaattccttaacttccctacgcttttccaacccgcctaacccccgaacattccaagacacaatcctcatcgcacacaccc 17723918  T
Q  213 tccccc 218  Q
     |||||    
T  17723919 cccccc 17723924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 4935184 - 4934982
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    |||||| ||||||||| |  ||||||||| ||| ||||| | | ||||||||| ||| ||||||| |||||||||||| ||||| |||||||||||||||    
T  4935184 agacgggctataagaatagtcatgattcgtaggaccccaaaccaaagtacagaaaaactcatcaacaacctccatcttagtttcttgaatacacaacaca 4935085  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    || ||| |||||| |||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||| || |||||||||||  || ||||||    
T  4935084 aatggcttcttttcccgcactaactccttaacttccctacgcttttccatccctcctaaaccccgaacattccacgacacaatcctcattacaaacaccc 4934985  T
Q  213 tcc 215  Q
    |||    
T  4934984 tcc 4934982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 23241465 - 23241670
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    ||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  23241465 agacgaactataagaaaaatcatgattcgaaggtccccataacgaagtacagagaaaatcatcaataacctccatctttgtttcttgaatacacaacacg 23241564  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23241565 aaaggcatcttttcccgcaccaattccttaacttccctacacttttccatcccgcctaacccccgaacattccaagatacaatcctcatcgcacacaccc 23241664  T
Q  213 tccccc 218  Q
    ||||||    
T  23241665 tccccc 23241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 25854419 - 25854311
Alignment:
Q  89 tttgtttcctgaatacacaacacaaaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaag 188  Q
    |||| ||| |||||||||||||| ||||||| ||||| ||||||||| ||||| |||||| | | ||| |||||||||  ||||||||| |||||||| |    
T  25854419 tttgattcttgaatacacaacacgaaaggcaccttttcccgcaccaactccttgacttcctttctcttctccaacccatttaacccccgcacattccacg 25854320  T
Q  189 atacaatcc 197  Q
    | |||||||    
T  25854319 acacaatcc 25854311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 19917268 - 19917083
Alignment:
Q  33 catgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacacaaaaggcatctttttccgcac 132  Q
    ||||||||| ||| ||||| ||||||| ||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  19917268 catgattcgtaggaccccaaaacgaagaacataaaaagtcatcaacaacctccatctttgtttcttgaatacacaacacaaaaggcctcttttcccgcac 19917169  T
Q  133 caattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctccccc 218  Q
     || | |||||||||||| |||||||||| ||| ||||| |||||||||||||| || |||||||||||| || ||||||||||||    
T  19917168 taaattcttaacttccctccgcttttccatccctcctaaaccccgaacattccacgacacaatcctcatcacaaacaccctccccc 19917083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 2367295 - 2367498
Alignment:
Q  15 acggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacacaaa 114  Q
    |||| |||||||||||  ||||||| | ||| ||||| | ||||||||| | ||| ||||||| |||||||||||| ||||| |||||||||||||||||    
T  2367295 acgggctataagaaaagtcatgattagtaggaccccaaaccgaagtacataaaaactcatcaacaacctccatcttagtttcttgaatacacaacacaaa 2367394  T
Q  115 aggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctc 214  Q
    |||| |||||| |||||| || |||||||||||||| |||||||||| ||| ||||| ||||| |||||||| || |||||||||||  || ||||||||    
T  2367395 aggcctcttttcccgcactaactccttaacttcccttcgcttttccatccctcctaaaccccggacattccacgacacaatcctcattacaaacaccctc 2367494  T
Q  215 cccc 218  Q
    ||||    
T  2367495 cccc 2367498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 16187393 - 16187591
Alignment:
Q  20 ctataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacacaaaaggca 119  Q
    ||||||||| || ||||||||||  | ||||| |  || ||||| | ||||||||| || | || ||| || ||||| |||| ||||||||||||||| |    
T  16187393 ctataagaataatcatgattcgattgcccccaaactgacgtacataaaaaatcatctatcaactgcattttagtttcttgaagacacaacacaaaaggta 16187492  T
Q  120 tctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctccccc 218  Q
    |||||| |  ||||||||||||||||||| ||||||| ||||||||||||||||| |  |||||||| || |  | |||||||||||| ||||||||||    
T  16187493 tcttttccttcaccaattccttaacttccttacgcttctccaacccacctaaccctcacacattccatgacaacaacctcatcgcacataccctccccc 16187591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 7927469 - 7927674
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacaca 112  Q
    |||||| |||||||||||  ||||||||| ||| ||||| | ||||||||| | ||| ||||||| |||||||||||| ||||| |||||||||||||||    
T  7927469 agacgggctataagaaaagtcatgattcgtaggaccccaaaccgaagtacataaaaactcatcaacaacctccatcttagtttcttgaatacacaacaca 7927568  T
Q  113 aaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccc 212  Q
    |||||| |||||| |||||| || ||||| |||||||| |||||||||| ||| ||||| ||||| |||||||| || |||||||||||  || ||||||    
T  7927569 aaaggcctcttttcccgcactaactccttgacttcccttcgcttttccatccctcctaaaccccggacattccacgacacaatcctcattacaaacaccc 7927668  T
Q  213 tccccc 218  Q
    ||||||    
T  7927669 tccccc 7927674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 8302887 - 8302982
Alignment:
Q  13 agacggactataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8302887 agacggactataagaaaaaccatgattcgaagggccccacagcgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaa 8302982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 20827460 - 20827569
Alignment:
Q  88 ctttgtttcctgaatacacaacacaaaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaa 187  Q
    ||||| ||| |||||||||||||||||||||| ||||| ||||||||| ||||| |||||| | | ||| |||||||||  ||||||||| || |||||     
T  20827460 ctttgattcttgaatacacaacacaaaaggcaccttttcccgcaccaactccttgacttcctttctcttctccaacccatttaacccccgcacgttccac 20827559  T
Q  188 gatacaatcc 197  Q
    || |||||||    
T  20827560 gacacaatcc 20827569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 13876466 - 13876344
Alignment:
Q  88 ctttgtttcctgaatacacaacacaaaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaa 187  Q
    ||||||||| |||||||||||||| ||||||  ||||| |   ||||  ||||| || ||| | | ||| |||||||||||||| ||||| ||||||||     
T  13876466 ctttgtttcttgaatacacaacacgaaaggcgccttttcctttaccagctccttgacctcctttctcttctccaacccacctaatccccgcacattccac 13876367  T
Q  188 gatacaatcctcatcgcacacac 210  Q
    || |||| |||||||||||||||    
T  13876366 gacacaaccctcatcgcacacac 13876344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 17603316 - 17603194
Alignment:
Q  88 ctttgtttcctgaatacacaacacaaaaggcatctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaa 187  Q
    ||||| ||| || ||||||||||| ||||||| ||||| ||||||||| ||||| |||||| | | ||| |||||||||  ||||||||| ||||||||     
T  17603316 ctttgattcttgtatacacaacacgaaaggcaccttttcccgcaccaactccttgacttcctttctcttctccaacccatttaacccccgcacattccac 17603217  T
Q  188 gatacaatcctcatcgcacacac 210  Q
    || |||||||||||  |||||||    
T  17603216 gacacaatcctcatttcacacac 17603194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 18679689 - 18679496
Alignment:
Q  21 tataagaaaaaccatgattcgaagggccccacaacgaagtacagagaaaatcatcaataacctccatctttgtttcctgaatacacaacacaaaaggcat 120  Q
    |||||||| || |||||||| |||| ||||| | ||| ||||| | ||||||||| || ||||  ||||| ||||| || || |||||||| || ||       
T  18679689 tataagaataatcatgattcaaaggcccccaaagcgatgtacataaaaaatcatctatgacctggatcttagtttcttggatgcacaacacgaatggaca 18679590  T
Q  121 ctttttccgcaccaattccttaacttccctacgcttttccaacccacctaacccccgaacattccaagatacaatcctcatcgcacacaccctc 214  Q
    |||   ||  |||||||||||||||||| | | ||| ||||||||||||||||| || |||||||| || |  | ||||||| |||||||||||    
T  18679589 cttcacccttaccaattccttaacttcctttctcttctccaacccacctaaccctcgcacattccacgacaacaacctcatctcacacaccctc 18679496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University