View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_29 (Length: 452)

Name: NF9072_low_29
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_29
NF9072_low_29
[»] chr3 (3 HSPs)
chr3 (117-166)||(6300016-6300065)
chr3 (405-440)||(33143579-33143614)
chr3 (33-65)||(6776667-6776699)
[»] chr7 (1 HSPs)
chr7 (405-440)||(6726046-6726081)
[»] chr1 (4 HSPs)
chr1 (405-440)||(11439647-11439682)
chr1 (405-440)||(9312967-9313002)
chr1 (405-440)||(9557327-9557362)
chr1 (405-437)||(27102604-27102636)
[»] chr5 (1 HSPs)
chr5 (405-440)||(26405175-26405210)
[»] chr4 (1 HSPs)
chr4 (405-440)||(41117595-41117630)
[»] chr2 (2 HSPs)
chr2 (405-439)||(29139579-29139613)
chr2 (301-381)||(26742644-26742724)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 6300016 - 6300065
Alignment:
Q  117 gtacaaatttgtattttcaaatttttcattcaagatttttaatcgatgct 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6300016 gtacaaatttgtattttcaaatttttcattcaagatttttaatcgatgct 6300065  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 33143579 - 33143614
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  33143579 aacaacaaattttattaaacaaccagatctctgctc 33143614  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 6776667 - 6776699
Alignment:
Q  33 tagatgtagtaatatactctaatggactcattg 65  Q
    |||||||||| ||||||||||||||||||||||    
T  6776667 tagatgtagtgatatactctaatggactcattg 6776699  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 6726046 - 6726081
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctc 6726081  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 11439647 - 11439682
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||||||||||||||||||||||||||    
T  11439647 aacaacaaattttattaaacaaccagatctctgctc 11439682  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 9312967 - 9313002
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9312967 aacaacaaattttattaaacaacgagatctctgctc 9313002  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 9557362 - 9557327
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9557362 aacaacaaattttgttaaacaaccagatctctgctc 9557327  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 27102636 - 27102604
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctg 437  Q
    |||| ||||||||||||||||||||||||||||    
T  27102636 aacagcaaattttattaaacaaccagatctctg 27102604  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 26405175 - 26405210
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    |||||||||||||||||||||||||||| |||||||    
T  26405175 aacaacaaattttattaaacaaccagatttctgctc 26405210  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 41117595 - 41117630
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgctc 440  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41117595 aacaacaaattttattaaacaactagatctctgctc 41117630  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 29139579 - 29139613
Alignment:
Q  405 aacaacaaattttattaaacaaccagatctctgct 439  Q
    |||||||| ||||||||||||||||||||||||||    
T  29139579 aacaacaatttttattaaacaaccagatctctgct 29139613  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 26742724 - 26742644
Alignment:
Q  301 tgctccttgaatcgaatttagaacaaaattgttgctacgtttgagatttcagtggttccttgatttgttattataagtgtt 381  Q
    |||||||||| || |||||| |  |||||||||||| |  ||||||||| |||| ||||| || ||||| |||||||||||    
T  26742724 tgctccttgagtcaaatttaaagaaaaattgttgctccacttgagatttgagtgattcctcgaattgttgttataagtgtt 26742644  T

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