View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_31 (Length: 447)
Name: NF9072_low_31
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Original strand, 3325023 - 3325435
Alignment:
| Q |
15 |
cacagagggacgcatataatttggagggacttgaaaacagtgggtttatatagagccgcaaaagnnnnnnntaatgcaagtaagttaaaagaaccaaata |
114 |
Q |
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| T |
3325023 |
cacagagggacgcatataatttggagggacttgaaaacagtgggtttatatagagccgcaaaagaaaaaa-taatgcaggtaagttaaaagaaccaaata |
3325121 |
T |
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| Q |
115 |
tataatcaatgagaaagattcatataacaaacgttacaataagagattaaacaatgactagaaatagattnnnnnnntgccatagcggataagttcatct |
214 |
Q |
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| T |
3325122 |
tataatcaatgagaaagattcatataacaaacgttacaataagagattaaacaatgactagaaatagattaaaaaaatgccataacggataagttcatct |
3325221 |
T |
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| Q |
215 |
tgtaattcagttaagttgggttgaacttacgagggatta----gaagattaaaatatgccaaaacagtaaagtggtaaaaaagaagaagtcaaattcttg |
310 |
Q |
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| T |
3325222 |
tgtaattcagttaagttgggttgaacttacgagggattaattagaagattaaaatatgccaaaacagtaaagtggtaaaaaagaagaagtcaaattcttg |
3325321 |
T |
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| Q |
311 |
gattgattaggtattattctctagctaaaatttgttttaaatttgaatttattttaaaaacaaattactaagaaaatatgacatatcattgattgattag |
410 |
Q |
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| T |
3325322 |
gattgattaggtattattctctagctaaaatttgttttacatttgaatttattttaaaaacaaattactaagaaaatatgacatatcattgattgattag |
3325421 |
T |
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| Q |
411 |
atgaatggcaccta |
424 |
Q |
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| T |
3325422 |
atgaatggcaccta |
3325435 |
T |
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Back To:
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 29465918 - 29465994
Alignment:
| Q |
340 |
atttgttttaaatttgaatttattttaaaaacaaattactaagaaaatatgacatatcattgattgattagatgaat |
416 |
Q |
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|||||||| | |||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| |
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| T |
29465918 |
atttgtttaacatttaaatttattttaaaataaaattaatatgaaaatatgacatgatattgattgattagatgaat |
29465994 |
T |
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