View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_34 (Length: 432)
Name: NF9072_low_34
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 35262868 - 35263299
Alignment:
| Q |
1 |
gggttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgtt |
100 |
Q |
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| T |
35262868 |
gggttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgtt |
35262967 |
T |
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| Q |
101 |
gagaattgttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatg |
200 |
Q |
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| T |
35262968 |
gagaattgttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatg |
35263067 |
T |
|
| Q |
201 |
ttgagaatagtccatcttatgataatgatgaagaaatggtgagagaggtgaagcgtnnnnnnngtggaatttttaagaggaaatacgagaaggtagagaa |
300 |
Q |
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| T |
35263068 |
ttgagaatagtccatcttatgataatgatgaagaaatggtgagagaggtgaagcgtaaaaaaagtggaatttttaagaggaaatacgagaaggtagagaa |
35263167 |
T |
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| Q |
301 |
tgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35263168 |
tgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtatcattgagaagaagggtagttcttcttct |
35263267 |
T |
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| Q |
401 |
aaactgaatggagtatcagagacactgaaacc |
432 |
Q |
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| T |
35263268 |
aaactgaatggagtatcagagacactgaaacc |
35263299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 16992447 - 16992265
Alignment:
| Q |
1 |
gggttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaaaggggaatttctgagggtaatgatgaggaagtaaatgtt |
100 |
Q |
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|||||| || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
16992447 |
gggttataggaaagatttcaatgtggtggaggagttggtaagaaaggtgaagagtcaaaaaaggggaatttctgagagtaataatgaggaagtaaatgtt |
16992348 |
T |
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| Q |
101 |
gagaattgttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaa |
183 |
Q |
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| T |
16992347 |
gagaatagttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaaaaagtagaatttctgagaggaa |
16992265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 167 - 431
Target Start/End: Complemental strand, 16992383 - 16992116
Alignment:
| Q |
167 |
ggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatcttatgataatgatgaagaa---atggtgagagaggtgaagcgtnnnnnnn |
263 |
Q |
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| T |
16992383 |
ggaatttctgagagtaataatgaggaagtaaatgttgagaatagttcatcttctgataatgatgatgaggagatggtgagagaggggaaggataaaaaaa |
16992284 |
T |
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| Q |
264 |
gtggaatttttaagaggaaatacgagaaggtagagaatgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttc |
363 |
Q |
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| T |
16992283 |
gtagaatttctgagaggaaatgtgaggaggtagagaatgagagcaatccatcttccacaaatattgatgagttggagcaagccgaccatgctagtgtttc |
16992184 |
T |
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| Q |
364 |
ctcctgtaccattgagaagaagggtagttcttcttctaaactgaatggagtatcagagacactgaaac |
431 |
Q |
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| T |
16992183 |
ctcctgtaccattgagaagaagggtagttcttcttctaagctgaatggagtaccagagacactgaaac |
16992116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 301 - 432
Target Start/End: Complemental strand, 16968600 - 16968469
Alignment:
| Q |
301 |
tgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16968600 |
tgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct |
16968501 |
T |
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| Q |
401 |
aaactgaatggagtatcagagacactgaaacc |
432 |
Q |
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| T |
16968500 |
aagctgaatggagtatcagagacactgaaacc |
16968469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 17007992 - 17007925
Alignment:
| Q |
299 |
aatgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctc |
366 |
Q |
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| T |
17007992 |
aatgagaatagtccatcttccacaagtactgatgagttggaacatgcagatcatgctagtgtttcctc |
17007925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 16968671 - 16968584
Alignment:
| Q |
131 |
gaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatctt |
218 |
Q |
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| T |
16968671 |
gaggagctggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaatgttgagaatagtccatctt |
16968584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 16824066 - 16823981
Alignment:
| Q |
133 |
ggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatctt |
218 |
Q |
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| T |
16824066 |
ggagatggtgagagaggtggaggatcaaaaatgtgtaatttctgagacgaataatgtggaggtaaacattgaaaatagtccttctt |
16823981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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