View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9072_low_36 (Length: 431)

Name: NF9072_low_36
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9072_low_36
NF9072_low_36
[»] chr4 (2 HSPs)
chr4 (18-404)||(3186890-3187276)
chr4 (334-404)||(20697874-20697944)
[»] chr1 (2 HSPs)
chr1 (123-404)||(52800805-52801095)
chr1 (18-137)||(52801114-52801233)
[»] chr7 (2 HSPs)
chr7 (18-144)||(18886491-18886617)
chr7 (123-218)||(18886901-18886997)
[»] chr5 (1 HSPs)
chr5 (18-63)||(3917486-3917531)
[»] chr6 (1 HSPs)
chr6 (334-373)||(12759140-12759178)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 3187276 - 3186890
Alignment:
Q  18 agttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaacatagtagt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187276 agttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaacatagtagt 3187177  T
Q  118 gctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctattctaactatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187176 gctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctattctaactatca 3187077  T
Q  218 ttgttgtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaataattgttgtct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3187076 ttgttgtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgttttttgaataattgttgtct 3186977  T
Q  318 ctcatgttggtaaatatattttgcatacctactctttctgatcttgttgttggtttgattcttgcaattaacaggtgagcatactat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3186976 ctcatgttggtaaatatattttgcatacctactctttctgatcttgttgttggtttgattcttgcaattaagaggtgagcatactat 3186890  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 20697944 - 20697874
Alignment:
Q  334 tattttgcatacctactctttctgatcttgttgttggtttgattcttgcaattaacaggtgagcatactat 404  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| ||||    
T  20697944 tattttgcatacctactctttctgatcttgcggttggtttgattcttgcaattaacaggtgggcatcctat 20697874  T

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Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 123 - 404
Target Start/End: Complemental strand, 52801095 - 52800805
Alignment:
Q  123 ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctattctaactatcattgtt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52801095 ttgttttataatgtttaatgttctttaacttctcatggaaatggaagatgtacaaataaatggttaaattatggcctatgctattctaactatcattgtt 52800996  T
Q  223 gtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaataattgttgtctctcat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800995 gtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaataattgttgtctctcat 52800896  T
Q  323 gttggtaaatatatt---------ttgcatacctactctttctgatcttgttgttggtttgattcttgcaattaacaggtgagcatactat 404  Q
    |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800895 gttggtaaatatattttgcttattttgcatacctactctttctgatcttgttgttggtttgattcttgcaattaacaggtgagcatactat 52800805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 52801233 - 52801114
Alignment:
Q  18 agttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaacatagtagt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  52801233 agttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatggaacatagtagc 52801134  T
Q  118 gctgtttgttttataatgtt 137  Q
    ||||||||||||||||||||    
T  52801133 gctgtttgttttataatgtt 52801114  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 18886491 - 18886617
Alignment:
Q  18 agttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaacatagtagt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |  || ||||||||||||||||    
T  18886491 agttgttaagttctattttccaaataaagaatcaatctcaaggcaacaagcagctacatgtcttgtttgtggagatagacggacaatggaacatagtagt 18886590  T
Q  118 gctgtttgttttataatgtttaatgtt 144  Q
    |||||||||||||| ||||||||||||    
T  18886591 gctgtttgttttattatgtttaatgtt 18886617  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 18886901 - 18886997
Alignment:
Q  123 ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaat-aaatggttaaattatggcttatgctattctaactatcat 218  Q
    ||||||||||||||||| |||||||||| |||||||| || ||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  18886901 ttgttttataatgtttagtgttctttaaattctcatgcaagtgggagatgcacaaataaaatggttatattatggcttatgcttttctaactatcat 18886997  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3917486 - 3917531
Alignment:
Q  18 agttgttatgttctattttccaaataaagaatcaatctcaaggcac 63  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||    
T  3917486 agttgtcaagttctattttccgaataaagaatcaatctcaaggcac 3917531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 373
Target Start/End: Original strand, 12759140 - 12759178
Alignment:
Q  334 tattttgcatacctactctttctgatcttgttgttggttt 373  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12759140 tattttgcatac-tactctttctgatcttgttgttggttt 12759178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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