View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_37 (Length: 430)
Name: NF9072_low_37
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 5285322 - 5284922
Alignment:
| Q |
14 |
tggtggttcaaggggaattccatgagcactacaccactgcacaatcaaattcctcaaggcacgattcgggacaagacgagtgtgagcaagcgtttgacct |
113 |
Q |
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| T |
5285322 |
tggtggttcaaggggaattccatgagcactacaccactgcacaatcaaattcctcaaggcacgattcgggacaagacgagtgtgagcaagcgtttgacct |
5285223 |
T |
|
| Q |
114 |
gtctttgggcaagttgtatgcccttcatccatccacctagaaatggagctcctatcataagtttgaccggtggaaataatcactggatctctcatcaaat |
213 |
Q |
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| T |
5285222 |
gtctttgggcaagttgtatgcccttcatccatccacctagaaatggagctcctatcataagtttgaccggtggaaataatcactggatctctcatcaaat |
5285123 |
T |
|
| Q |
214 |
ccaatgatatcgggcaacaaaagtcttttggaacagttaaaaatgtatcagcaatttcttgagtaatcaaacccttcttgatcttcttctgacttccatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5285122 |
ccaatgatatcgggcaacaaaagtcttttggaacagttaaaaatgtatcagcaatttcttgagtaatcaaacccttcttgatcttcttctgacttccatt |
5285023 |
T |
|
| Q |
314 |
ttccatatcaagctcatcttcctcaaatccaaatatcaaaaacctacaataccgcgtcatggccaccaaccctttaagcacagaaactgtaggctcaata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5285022 |
ttccatatcaagctcatcttcctcaaatccaaatatcaaaaacctacaataccgcgtcatggccaccaaccctttaagcacagaaactgtaggctcaata |
5284923 |
T |
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| Q |
414 |
t |
414 |
Q |
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| T |
5284922 |
t |
5284922 |
T |
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