View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_40 (Length: 420)
Name: NF9072_low_40
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 41675897 - 41675583
Alignment:
| Q |
1 |
atagagagagactctagacaacaggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggtaagttgaag |
100 |
Q |
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| T |
41675897 |
atagagagagactctagacaacaggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggtaagttgaag |
41675798 |
T |
|
| Q |
101 |
ccattgaagagcataagctattaagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatgcaacatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675797 |
ccattgaagagcataagctattaagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatgcaacatat |
41675698 |
T |
|
| Q |
201 |
ataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataactcactttagttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675697 |
ataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataactcactttagttaa |
41675598 |
T |
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| Q |
301 |
ctcttaattacaatc |
315 |
Q |
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||||||||||||||| |
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| T |
41675597 |
ctcttaattacaatc |
41675583 |
T |
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