View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9072_low_42 (Length: 373)
Name: NF9072_low_42
Description: NF9072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9072_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 21597731 - 21598058
Alignment:
| Q |
28 |
agcacagacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaaca |
127 |
Q |
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| T |
21597731 |
agcaccgacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattctaaggaatgaaaacgagccaccagcaaca |
21597830 |
T |
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| Q |
128 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgagac |
227 |
Q |
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| T |
21597831 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcgaaac |
21597930 |
T |
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| Q |
228 |
gagcttcttgacctgtaacgacgaagataccagagccaacaacagcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtatt |
327 |
Q |
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| T |
21597931 |
gagcttcttgaccggtaacgacgaagataccagagccaacgacagcgccgaaagcgagccatgttaagtcccaccaagtgagacaacgagtcattgtatt |
21598030 |
T |
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| Q |
328 |
ttcactagctttgggaaggacgagaagt |
355 |
Q |
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| T |
21598031 |
ttcactggctttgggaaggacgagaagt |
21598058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 11987507 - 11987687
Alignment:
| Q |
40 |
agcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaacaggaacttcaacg |
139 |
Q |
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||||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||| ||||| ||||||||||| |
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| T |
11987507 |
agcttcaaggagaatattcccggcagcaatgaaagcgaggaagtcaccgagttcgattcttaggaatcaaaacgaaccaccggcaacgggaacttcaact |
11987606 |
T |
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| Q |
140 |
gcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
220 |
Q |
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| T |
11987607 |
gcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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